Welcome to Ontobee!

Ontobee: A web server aimed to facilitate ontology visualization, query, and development. Ontobee provides a user-friendly web interface for displaying the details and its hierarchy of a specific ontology term. Meanwhile, Ontobee provides a RDF source code for the particular web page, which supports remote query of the ontology term and the Semantic Web.

Currently Ontobee has been tested for the following ontologies:

No.	Ontology Prefix	Ontology Full Name	List of Terms
1	AAO	Amphibian gross anatomy
2	AEO	Anatomical Entity Ontology
3	AERO	Adverse Event Reporting Ontology
4	APO	Ascomycete phenotype ontology
5	APOLLO_SV	Apollo Structured Vocabulary
6	ATO	Amphibian taxonomy
7	BCGO	Beta Cell Genomics Ontology
8	BCO	Biological Collections Ontology
9	BFO	Basic Formal Ontology
10	BFO11	Basic Formal Ontology (BFO) 1.1
11	BILA	Bilateria anatomy
12	BSPO	Biological Spatial Ontology
13	BTO	BRENDA tissue / enzyme source
14	CARO	Common Anatomy Reference Ontology
15	CDAO	Comparative Data Analysis Ontology
16	CHEBI	Chemical entities of biological interest
17	CHEMINF	Chemical Information Ontology
18	CHMO	Chemical Methods Ontology
19	CL	Cell type
20	CLO	Cell Line Ontology
21	CMO	Clinical measurement ontology
22	CVDO	Cardiovascular Disease Ontology
23	DC_CL	Dendritic cell
24	DDANAT	Dictyostelium discoideum anatomy
25	DOID	Human disease ontology
26	DRON	The Drug Ontology
27	ECO	Evidence codes
28	EFO	Experimental Factor Ontology
29	EHDA	Human developmental anatomy, timed version
30	EHDAA	Human developmental anatomy, abstract version
31	EHDAA2	Human developmental anatomy, abstract version, v2
32	EMAP	Mouse gross anatomy and development
33	ENVO	Environment Ontology
34	EO	Plant Environmental Conditions
35	ERO	eagle-i resource ontology
36	FAO	Fungal gross anatomy
37	FBbi	Biological imaging methods
38	FBbt	Drosophila gross anatomy
39	FBcv	FlyBase Controlled Vocabulary
40	FBdv	Drosophila development
41	FBsp	Fly taxonomy
42	FIX	Physico-chemical methods and properties
43	FLU	Influenza Ontology
44	FMA	Foundational Model of Anatomy (subset)
45	FYPO	Fission Yeast Phenotype Ontology
46	GO	Gene Ontology
47	GRO	Cereal Plant Gross Anatomy
48	GRO	Cereal plant development
49	HAO	Hymenoptera Anatomy Ontology
50	HINO	Human Interaction Network Ontology
51	HOM	homology_ontology
52	HP	human phenotype ontology
53	IAO	Information Artifact Ontology
54	IDO	Infectious disease
55	IDOBRU	Brucellosis Ontology
56	IDOMAL	Malaria Ontology
57	IEV	Event (INOH pathway ontology)
58	IMR	Molecule role (INOH Protein name/family name ontology)
59	INO	Interaction Network Ontology
60	MA	Mouse adult gross anatomy
61	MAT	Minimal anatomical terminology
62	MF	Mental Functioning Ontology
63	MFO	Medaka fish anatomy and development
64	MFOEM	Emotion Ontology
65	MI	Protein-protein interaction
66	MIAPA	MIAPA Ontology
67	miRNAO	microRNA Ontology
68	MIRO	Mosquito insecticide resistance
69	MMO	Measurement method ontology
70	MO	Microarray experimental conditions
71	MOD	Protein modification
72	MP	Mammalian phenotype
73	MPATH	Mouse pathology
74	MS	Mass spectrometry
75	NBO	Neuro Behavior Ontology
76	NCBITaxon	NCBI organismal classification
77	NDF-RT	National Drug File Reference Terminology
78	NIF_Cell	NIF Cell
79	NIF_Dysfunction	NIF Dysfunction
80	NIF_GrossAnatomy	NIF Gross Anatomy
81	NMR	NMR-instrument specific component of metabolomics investigations
82	OAE	Ontology of Adverse Events
83	OBI	Ontology for biomedical investigations
84	OBIws	OBI web service, development version
85	OBO_REL	OBO relationship types (legacy)
86	OCRe	OCRe
87	OGI	Ontology for genetic interval
88	OGMS	Ontology for General Medical Science
89	OGSF	Ontology of Genetic Susceptibility Factor
90	OHD	Oral Health and Disease Ontology
91	OMRSE	Ontology of Medically Related Social Entities
92	OPL	Ontology for Parasite LifeCycle
93	OVAE	Ontology of Vaccine Adverse Events
94	PATO	Phenotypic quality
95	PCO	Population and Community Ontology
96	PD_ST	Platynereis stage ontology
97	PO	Plant Ontology
98	PORO	Porifera Ontology
99	PR	PRotein Ontology (PRO)
100	ProPreO	Proteomics data and process provenance
101	PW	Pathway ontology
102	REO	Reagent Ontology
103	REX	Physico-chemical process
104	RO	Relation ontology (dev)
105	RS	Rat Strain Ontology
106	SAO	Subcellular anatomy ontology
107	SEP	Sample processing and separation techniques
108	SO	Sequence types and features
109	SOPHARM	Suggested Ontology for Pharmacogenomics
110	SPD	Spider Ontology
111	SWO	Software ontology
112	SYMP	Symptom Ontology
113	TADS	Tick gross anatomy
114	TAO	Teleost Anatomy Ontology
115	TAXRANK	Taxonomic rank vocabulary
116	TGMA	Mosquito gross anatomy
117	TO	Plant Trait Ontology
118	TRANS	Pathogen transmission
119	TTO	Teleost taxonomy
120	UBERON	Uber anatomy ontology
121	uberon_collected_metazoa	uberon_collected_metazoa
122	UO	Units of measurement
123	VariO	Variation Ontology
124	vHOG	verteberate Homologous Organ Groups
125	VO	Vaccine ontology
126	VSAO	Vertebrate Skeletal Anatomy Ontology
127	WBbt	C. elegans gross anatomy
128	WBls	C. elegans development
129	WBPhenotype	C. elegans phenotype
130	XAO	Xenopus anatomy and development
131	XCO	Experimental condition ontology
132	YPO	Yeast phenotypes
133	ZFA	Zebrafish anatomy and development
134	ZFS	Zebrafish developmental stages

Please cite the following reference for Ontobee:

Xiang Z, Mungall C, Ruttenberg A, He Y. Ontobee: A Linked Data Server and Browser for Ontology Terms. International Conference on Biomedical Ontologies (ICBO), University at Buffalo, NY, July 26-30, 2011. Pages 279-281.