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Welcome to Ontobee!

Ontobee: A linked data server designed for ontologies. Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis. Ontobee dynamically dereferences and presents individual ontology term URIs to (i) HTML web pages for user-friendly web browsing and navigation, and to (ii) RDF source code for Semantic Web applications. Ontobee is the default linked data server for most OBO Foundry library ontologies. Ontobee has also been used for many non-OBO ontologies.

Jump to http://purl.obolibrary.org/obo/

Currently Ontobee has been applied for the following ontologies:

No. Ontology Prefix Ontology Full Name List of Terms
1 AEO Anatomical Entity Ontology Excel format
2 AERO Adverse Event Reporting Ontology Excel format
3 APO Ascomycete phenotype ontology Excel format
4 APOLLO_SV Apollo Structured Vocabulary Excel format
5 ATO Amphibian taxonomy Excel format
6 BCGO Beta Cell Genomics Ontology Excel format
7 BCO Biological Collections Ontology Excel format
8 BFO Basic Formal Ontology Excel format
9 BFO11 Basic Formal Ontology (BFO) 1.1 Excel format
10 BILA Bilateria anatomy Excel format
11 BSPO Biological Spatial Ontology Excel format
12 BTO BRENDA tissue / enzyme source Excel format
13 CARO Common Anatomy Reference Ontology Excel format
14 CDAO Comparative Data Analysis Ontology Excel format
15 CHEBI Chemical entities of biological interest Excel format
16 CHEMINF Chemical Information Ontology Excel format
17 CHMO Chemical Methods Ontology Excel format
18 CL Cell type Excel format
19 CLO Cell Line Ontology Excel format
20 CMO Clinical measurement ontology Excel format
21 CVDO Cardiovascular Disease Ontology Excel format
22 d-acts Ontology of Document Acts Excel format
23 DC_CL Dendritic cell Excel format
24 DDANAT Dictyostelium discoideum anatomy Excel format
25 DOID Human disease ontology Excel format
26 DRON The Drug Ontology Excel format
27 ECO Evidence codes Excel format
28 EFO Experimental Factor Ontology Excel format
29 EHDA Human developmental anatomy, timed version Excel format
30 EHDAA Human developmental anatomy, abstract version Excel format
31 EHDAA2 Human developmental anatomy, abstract version, v2 Excel format
32 EMAP Mouse gross anatomy and development, timed Excel format
33 EMAPA Mouse gross anatomy and development, abstract Excel format
34 ENVO Environment Ontology Excel format
35 EO Plant Environmental Conditions Excel format
36 EPO Epidemiology Ontology Excel format
37 ERO eagle-i resource ontology Excel format
38 FAO Fungal gross anatomy Excel format
39 FBbi Biological imaging methods Excel format
40 FBbt Drosophila gross anatomy Excel format
41 FBcv FlyBase Controlled Vocabulary Excel format
42 FBdv Drosophila development Excel format
43 FBsp Fly taxonomy Excel format
44 FIX Physico-chemical methods and properties Excel format
45 FLU Influenza Ontology Excel format
46 FMA Foundational Model of Anatomy (subset) Excel format
47 FYPO Fission Yeast Phenotype Ontology Excel format
48 GAZ Gazetteer Excel format
49 GO Gene Ontology Excel format
50 GRO Cereal Plant Gross Anatomy Excel format
51 GRO Cereal plant development Excel format
52 HAO Hymenoptera Anatomy Ontology Excel format
53 HINO Human Interaction Network Ontology Excel format
54 HOM homology_ontology Excel format
55 HP human phenotype ontology Excel format
56 IAO Information Artifact Ontology Excel format
57 ICO Informed Consent Ontology Excel format
58 IDO Infectious disease Excel format
59 IDOBRU Brucellosis Ontology Excel format
60 IDOMAL Malaria Ontology Excel format
61 IEV Event (INOH pathway ontology) Excel format
62 IMR Molecule role (INOH Protein name/family name ontology) Excel format
63 INO Interaction Network Ontology Excel format
64 MA Mouse adult gross anatomy Excel format
65 MAT Minimal anatomical terminology Excel format
66 MF Mental Functioning Ontology Excel format
67 MFO Medaka fish anatomy and development Excel format
68 MFOEM Emotion Ontology Excel format
69 MI Protein-protein interaction Excel format
70 MIAPA MIAPA Ontology Excel format
71 miRNAO microRNA Ontology Excel format
72 MIRO Mosquito insecticide resistance Excel format
73 MMO Measurement method ontology Excel format
74 MO Microarray experimental conditions Excel format
75 MOD Protein modification Excel format
76 MP Mammalian phenotype Excel format
77 MPATH Mouse pathology Excel format
78 MS Mass spectrometry Excel format
79 NBO Neuro Behavior Ontology Excel format
80 NCBITaxon NCBI organismal classification Excel format
81 NDF-RT National Drug File Reference Terminology Excel format
82 NIF_Cell NIF Cell Excel format
83 NIF_Dysfunction NIF Dysfunction Excel format
84 NIF_GrossAnatomy NIF Gross Anatomy Excel format
85 NMR NMR-instrument specific component of metabolomics investigations Excel format
86 OAE Ontology of Adverse Events Excel format
87 OBCS Ontology of Biological and Clinical Statistics (OBCS) Excel format
88 OBI Ontology for Biomedical Investigations Excel format
89 OBIws OBI web service, development version Excel format
90 OCRe OCRe Excel format
91 OGG Ontology of Genes and Genomes Excel format
92 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana Excel format
93 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans Excel format
94 OGG-Dm Ontology of Genes and Genomes - Fruit Fly Excel format
95 OGG-Dr Ontology of Genes and Genomes - Zebrafish Excel format
96 OGG-Mm Ontology of Genes and Genomes - Mouse Excel format
97 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum Excel format
98 OGG-Sc Ontology of Genes and Genomes - Yeast Excel format
99 OGI Ontology for genetic interval Excel format
100 OGMS Ontology for General Medical Science Excel format
101 OGSF Ontology of Genetic Susceptibility Factor Excel format
102 OHD Oral Health and Disease Ontology Excel format
103 OMIABIS Ontologized MIABIS Excel format
104 OMIT Ontology for MIRNA Target Prediction Excel format
105 OMRSE Ontology of Medically Related Social Entities Excel format
106 OPL Ontology for Parasite LifeCycle Excel format
107 OVAE Ontology of Vaccine Adverse Events Excel format
108 PATO Phenotypic quality Excel format
109 PCO Population and Community Ontology Excel format
110 PD_ST Platynereis stage ontology Excel format
111 PO Plant Ontology Excel format
112 PORO Porifera Ontology Excel format
113 PR PRotein Ontology (PRO) Excel format
114 ProPreO Proteomics data and process provenance Excel format
115 PW Pathway ontology Excel format
116 REO Reagent Ontology Excel format
117 REX Physico-chemical process Excel format
118 RO OBO Relation Ontology Excel format
119 RS Rat Strain Ontology Excel format
120 SAO Subcellular anatomy ontology Excel format
121 SEP Sample processing and separation techniques Excel format
122 SO Sequence types and features Excel format
123 SPD Spider Ontology Excel format
124 SWO Software ontology Excel format
125 SYMP Symptom Ontology Excel format
126 TADS Tick gross anatomy Excel format
127 TAO Teleost Anatomy Ontology Excel format
128 TAXRANK Taxonomic rank vocabulary Excel format
129 TGMA Mosquito gross anatomy Excel format
130 TO Plant Trait Ontology Excel format
131 TRANS Pathogen transmission Excel format
132 TTO Teleost taxonomy Excel format
133 UBERON Uber anatomy ontology Excel format
134 uberon_collected_metazoa uberon_collected_metazoa Excel format
135 UO Units of measurement Excel format
136 VariO Variation Ontology Excel format
137 vHOG verteberate Homologous Organ Groups Excel format
138 VIVO-ISF VIVO-ISF Excel format
139 VO Vaccine ontology Excel format
140 VSAO Vertebrate Skeletal Anatomy Ontology Excel format
141 VTO Vertebrate Taxonomy Ontology Excel format
142 WBbt C. elegans gross anatomy Excel format
143 WBls C. elegans development Excel format
144 WBPhenotype C. elegans phenotype Excel format
145 XAO Xenopus anatomy and development Excel format
146 XCO Experimental condition ontology Excel format
147 YPO Yeast phenotypes Excel format
148 ZFA Zebrafish anatomy and development Excel format

Please cite the following reference for Ontobee:

Xiang Z, Mungall C, Ruttenberg A, He Y. Ontobee: A Linked Data Server and Browser for Ontology Terms. Proceedings of the 2nd International Conference on Biomedical Ontologies (ICBO), July 28-30, 2011, Buffalo, NY, USA. Pages 279-281. URL: http://ceur-ws.org/Vol-833/paper48.pdf.