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Welcome to Ontobee!

Ontobee: A linked data server designed for ontologies. Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis. Ontobee dynamically dereferences and presents individual ontology term URIs to (i) HTML web pages for user-friendly web browsing and navigation, and to (ii) RDF source code for Semantic Web applications. Ontobee is the default linked data server for most OBO Foundry library ontologies. Ontobee has also been used for many non-OBO ontologies.

Jump to http://purl.obolibrary.org/obo/

Currently Ontobee has been applied for the following ontologies:

No. Ontology Prefix Ontology Full Name List of Terms
1 AEO Anatomical Entity Ontology Excel XLS format Excel XLSX format
2 AERO Adverse Event Reporting Ontology Excel XLS format Excel XLSX format
3 APOLLO_SV Apollo Structured Vocabulary Excel XLS format Excel XLSX format
4 ATO Amphibian taxonomy Excel XLS format Excel XLSX format
5 BAO BioAssay Ontology Excel XLS format Excel XLSX format
6 BCGO Beta Cell Genomics Ontology Excel XLS format Excel XLSX format
7 BCO Biological Collections Ontology Excel XLS format Excel XLSX format
8 BFO Basic Formal Ontology Excel XLS format Excel XLSX format
9 BFO11 Basic Formal Ontology (BFO) 1.1 Excel XLS format Excel XLSX format
10 BILA Bilateria anatomy Excel XLS format Excel XLSX format
11 BSPO Biological Spatial Ontology Excel XLS format Excel XLSX format
12 BTO BRENDA tissue / enzyme source Excel XLS format Excel XLSX format
13 CARO Common Anatomy Reference Ontology Excel XLS format Excel XLSX format
14 CDAO Comparative Data Analysis Ontology Excel XLS format Excel XLSX format
15 CEPH Cephalopod Ontology Excel XLS format Excel XLSX format
16 CHEBI Chemical Entities of Biological Interest Excel XLS format Excel XLSX format
17 CHEMINF Chemical Information Ontology Excel XLS format Excel XLSX format
18 CHMO Chemical Methods Ontology Excel XLS format Excel XLSX format
19 CL Cell Ontology Excel XLS format Excel XLSX format
20 CLO Cell Line Ontology Excel XLS format Excel XLSX format
21 CMO Clinical measurement ontology Excel XLS format Excel XLSX format
22 CVDO Cardiovascular Disease Ontology Excel XLS format Excel XLSX format
23 d-acts Ontology of Document Acts Excel XLS format Excel XLSX format
24 DC_CL Dendritic cell Excel XLS format Excel XLSX format
25 DDANAT Dictyostelium discoideum anatomy Excel XLS format Excel XLSX format
26 DOID Human Disease Ontology Excel XLS format Excel XLSX format
27 DRON The Drug Ontology Excel XLS format Excel XLSX format
28 ECO Evidence ontology Excel XLS format Excel XLSX format
29 EDAM EMBRACE Data and Methods Excel XLS format Excel XLSX format
30 EFO Experimental Factor Ontology Excel XLS format Excel XLSX format
31 EHDA Human developmental anatomy, timed version Excel XLS format Excel XLSX format
32 EHDAA Human developmental anatomy, abstract version Excel XLS format Excel XLSX format
33 EHDAA2 Human developmental anatomy, abstract Excel XLS format Excel XLSX format
34 EO Plant Environment Ontology Excel XLS format Excel XLSX format
35 EPO Epidemiology Ontology Excel XLS format Excel XLSX format
36 ERO eagle-i resource ontology Excel XLS format Excel XLSX format
37 ExO Exposure ontology Excel XLS format Excel XLSX format
38 FBBT Drosophila gross anatomy Excel XLS format Excel XLSX format
39 FBCV FlyBase Controlled Vocabulary Excel XLS format Excel XLSX format
40 FBdv Drosophila development Excel XLS format Excel XLSX format
41 FBsp Fly taxonomy Excel XLS format Excel XLSX format
42 FIX Physico-chemical methods and properties Excel XLS format Excel XLSX format
43 FLU Influenza Ontology Excel XLS format Excel XLSX format
44 GO Gene Ontology Excel XLS format Excel XLSX format
45 HINO Human Interaction Network Ontology Excel XLS format Excel XLSX format
46 HOM Homology Ontology Excel XLS format Excel XLSX format
47 HP human phenotype ontology Excel XLS format Excel XLSX format
48 IAO Information Artifact Ontology Excel XLS format Excel XLSX format
49 IAO-Onto-Meta IAO Ontology Metadata Excel XLS format Excel XLSX format
50 ICO Informed Consent Ontology Excel XLS format Excel XLSX format
51 IDO Infectious disease Excel XLS format Excel XLSX format
52 IDOBRU Brucellosis Ontology Excel XLS format Excel XLSX format
53 IDOMAL Malaria Ontology Excel XLS format Excel XLSX format
54 IEV Event (INOH pathway ontology) Excel XLS format Excel XLSX format
55 IMR Molecule role (INOH Protein name/family name ontology) Excel XLS format Excel XLSX format
56 INO Interaction Network Ontology Excel XLS format Excel XLSX format
57 KISAO Kinetic Simulation Algorithm Ontology Excel XLS format Excel XLSX format
58 LINCS-CLOview CLO LINCS view Excel XLS format Excel XLSX format
59 MA Mouse adult gross anatomy Excel XLS format Excel XLSX format
60 MAMO Mathematical modeling ontology Excel XLS format Excel XLSX format
61 MAT Minimal anatomical terminology Excel XLS format Excel XLSX format
62 MFOMD MFO Mental Disease Ontology Excel XLS format Excel XLSX format
63 MIAPA MIAPA Ontology Excel XLS format Excel XLSX format
64 miRNAO microRNA Ontology Excel XLS format Excel XLSX format
65 MIRO Mosquito insecticide resistance Excel XLS format Excel XLSX format
66 MMO Measurement method ontology Excel XLS format Excel XLSX format
67 MO Microarray experimental conditions Excel XLS format Excel XLSX format
68 MOP Molecular Process Ontology Excel XLS format Excel XLSX format
69 MPATH Mouse pathology Excel XLS format Excel XLSX format
70 MRO MHC Restriction Ontology Excel XLS format Excel XLSX format
71 MS Mass spectrometry ontology Excel XLS format Excel XLSX format
72 NCBITaxon NCBI organismal classification Excel XLS format Excel XLSX format
73 NCRO Non-Coding RNA Ontology Excel XLS format Excel XLSX format
74 NDF-RT National Drug File Reference Terminology Excel XLS format Excel XLSX format
75 NIF_Cell NIF Cell Excel XLS format Excel XLSX format
76 NIF_Dysfunction NIF Dysfunction Excel XLS format Excel XLSX format
77 NIF_GrossAnatomy NIF Gross Anatomy Excel XLS format Excel XLSX format
78 NMR NMR-instrument specific component of metabolomics investigations Excel XLS format Excel XLSX format
79 OAE Ontology of Adverse Events Excel XLS format Excel XLSX format
80 OBA Ontology of Biological Attributes Excel XLS format Excel XLSX format
81 OBCS Ontology of Biological and Clinical Statistics Excel XLS format Excel XLSX format
82 OBI Ontology for Biomedical Investigations Excel XLS format Excel XLSX format
83 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view Excel XLS format Excel XLSX format
84 OBIB Ontology for Biobanking Excel XLS format Excel XLSX format
85 OBIws OBI web service, development version Excel XLS format Excel XLSX format
86 OCRe OCRe Excel XLS format Excel XLSX format
87 ODNAE Ontologyof Drug Neuropathy Adverse Events Excel XLS format Excel XLSX format
88 OGG The Ontology of Genes and Genomes Excel XLS format Excel XLSX format
89 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana Excel XLS format Excel XLSX format
90 OGG-Bru Ontology of Genes and Genomes - Brucella Excel XLS format Excel XLSX format
91 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans Excel XLS format Excel XLSX format
92 OGG-Dm Ontology of Genes and Genomes - Fruit Fly Excel XLS format Excel XLSX format
93 OGG-Dr Ontology of Genes and Genomes - Zebrafish Excel XLS format Excel XLSX format
94 OGG-Mm Ontology of Genes and Genomes - Mouse Excel XLS format Excel XLSX format
95 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum Excel XLS format Excel XLSX format
96 OGG-Sc Ontology of Genes and Genomes - Yeast Excel XLS format Excel XLSX format
97 OGI Ontology for genetic interval Excel XLS format Excel XLSX format
98 OGMS Ontology for General Medical Science Excel XLS format Excel XLSX format
99 OGSF Ontology of Genetic Susceptibility Factor Excel XLS format Excel XLSX format
100 OHD Oral Health and Disease Ontology Excel XLS format Excel XLSX format
101 OMIABIS Ontologized MIABIS Excel XLS format Excel XLSX format
102 OMIT Ontology for MIRNA Target Excel XLS format Excel XLSX format
103 OMRSE Ontology of Medically Related Social Entities Excel XLS format Excel XLSX format
104 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems Excel XLS format Excel XLSX format
105 OPL Ontology for Parasite LifeCycle Excel XLS format Excel XLSX format
106 OVAE Ontology of Vaccine Adverse Events Excel XLS format Excel XLSX format
107 PATO Phenotypic quality Excel XLS format Excel XLSX format
108 PCO Population and Community Ontology Excel XLS format Excel XLSX format
109 PO Plant Ontology Excel XLS format Excel XLSX format
110 PORO Porifera Ontology Excel XLS format Excel XLSX format
111 ProPreO Proteomics data and process provenance Excel XLS format Excel XLSX format
112 PW Pathway ontology Excel XLS format Excel XLSX format
113 REO Reagent Ontology Excel XLS format Excel XLSX format
114 RXNO Name Reaction Ontology Excel XLS format Excel XLSX format
115 SAO Subcellular anatomy ontology Excel XLS format Excel XLSX format
116 SBO Systems Biology Excel XLS format Excel XLSX format
117 SEP Sample processing and separation techniques Excel XLS format Excel XLSX format
118 SIBO Social Insect Behavior Ontology Excel XLS format Excel XLSX format
119 SIO Semanticscience Integrated Ontology Excel XLS format Excel XLSX format
120 SPD Spider Ontology Excel XLS format Excel XLSX format
121 STATO The Statistical Methods Ontology Excel XLS format Excel XLSX format
122 SWO Software ontology Excel XLS format Excel XLSX format
123 SYMP Symptom Ontology Excel XLS format Excel XLSX format
124 TADS Tick gross anatomy Excel XLS format Excel XLSX format
125 TAO Teleost Anatomy Ontology Excel XLS format Excel XLSX format
126 TGMA Mosquito gross anatomy Excel XLS format Excel XLSX format
127 TO Plant Trait Ontology Excel XLS format Excel XLSX format
128 TRANS Pathogen Transmission Ontology Excel XLS format Excel XLSX format
129 TTO Teleost taxonomy Excel XLS format Excel XLSX format
130 VariO Variation Ontology Excel XLS format Excel XLSX format
131 VHOG verteberate Homologous Organ Groups Excel XLS format Excel XLSX format
132 VICO Vaccination Informed Consent Ontology Excel XLS format Excel XLSX format
133 VIVO-ISF VIVO-ISF Excel XLS format Excel XLSX format
134 VO Vaccine Ontology Excel XLS format Excel XLSX format
135 VSAO Vertebrate Skeletal Anatomy Ontology Excel XLS format Excel XLSX format
136 VT Vertebrate trait Excel XLS format Excel XLSX format
137 VTO Vertebrate Taxonomy Ontology Excel XLS format Excel XLSX format
138 XAO Xenopus anatomy and development Excel XLS format Excel XLSX format
139 YPO Yeast phenotypes Excel XLS format Excel XLSX format

Please cite the following reference for Ontobee:

Xiang Z, Mungall C, Ruttenberg A, He Y. Ontobee: A Linked Data Server and Browser for Ontology Terms. Proceedings of the 2nd International Conference on Biomedical Ontologies (ICBO), July 28-30, 2011, Buffalo, NY, USA. Pages 279-281. URL: http://ceur-ws.org/Vol-833/paper48.pdf.