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Welcome to Ontobee!

Ontobee: A linked data server designed for ontologies. Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis. Ontobee dynamically dereferences and presents individual ontology term URIs to (i) HTML web pages for user-friendly web browsing and navigation, and to (ii) RDF source code for Semantic Web applications. Ontobee is the default linked data server for most OBO Foundry library ontologies. Ontobee has also been used for many non-OBO ontologies.

Jump to http://purl.obolibrary.org/obo/

Currently Ontobee has been applied for the following ontologies:

No. Ontology Prefix Ontology Full Name List of Terms
1 AEO Anatomical Entity Ontology Excel XLS format Excel XLSX format
2 AERO Adverse Event Reporting Ontology Excel XLS format Excel XLSX format
3 APO Ascomycete phenotype ontology Excel XLS format Excel XLSX format
4 APOLLO_SV Apollo Structured Vocabulary Excel XLS format Excel XLSX format
5 ATO Amphibian taxonomy Excel XLS format Excel XLSX format
6 BCGO Beta Cell Genomics Ontology Excel XLS format Excel XLSX format
7 BCO Biological Collections Ontology Excel XLS format Excel XLSX format
8 BFO Basic Formal Ontology Excel XLS format Excel XLSX format
9 BFO11 Basic Formal Ontology (BFO) 1.1 Excel XLS format Excel XLSX format
10 BILA Bilateria anatomy Excel XLS format Excel XLSX format
11 BSPO Biological Spatial Ontology Excel XLS format Excel XLSX format
12 BTO BRENDA tissue / enzyme source Excel XLS format Excel XLSX format
13 CARO Common Anatomy Reference Ontology Excel XLS format Excel XLSX format
14 CDAO Comparative Data Analysis Ontology Excel XLS format Excel XLSX format
15 CEPH Cephalopod Ontology Excel XLS format Excel XLSX format
16 CHEBI Chemical Entities of Biological Interest Excel XLS format Excel XLSX format
17 CHEMINF Chemical Information Ontology Excel XLS format Excel XLSX format
18 CHMO Chemical Methods Ontology Excel XLS format Excel XLSX format
19 CL Cell Ontology Excel XLS format Excel XLSX format
20 CLO Cell Line Ontology Excel XLS format Excel XLSX format
21 CMO Clinical measurement ontology Excel XLS format Excel XLSX format
22 CTENO Ctenophore Ontology Excel XLS format Excel XLSX format
23 CVDO Cardiovascular Disease Ontology Excel XLS format Excel XLSX format
24 d-acts Ontology of Document Acts Excel XLS format Excel XLSX format
25 DC_CL Dendritic cell Excel XLS format Excel XLSX format
26 DDANAT Dictyostelium discoideum anatomy Excel XLS format Excel XLSX format
27 DDPHENO Dictyostelium discoideum phenotype Excel XLS format Excel XLSX format
28 DIDEO Drug Interaction and Evidence Ontology Excel XLS format Excel XLSX format
29 DOID Human Disease Ontology Excel XLS format Excel XLSX format
30 DRON The Drug Ontology Excel XLS format Excel XLSX format
31 ECO Evidence ontology Excel XLS format Excel XLSX format
32 EDAM EMBRACE Data and Methods Excel XLS format Excel XLSX format
33 EFO Experimental Factor Ontology Excel XLS format Excel XLSX format
34 EHDA Human developmental anatomy, timed version Excel XLS format Excel XLSX format
35 EHDAA Human developmental anatomy, abstract version Excel XLS format Excel XLSX format
36 EHDAA2 Human developmental anatomy, abstract Excel XLS format Excel XLSX format
37 EMAP Mouse gross anatomy and development, timed Excel XLS format Excel XLSX format
38 EMAPA Mouse gross anatomy and development, timed Excel XLS format Excel XLSX format
39 ENVO Environment Ontology Excel XLS format Excel XLSX format
40 EO Plant Environment Ontology Excel XLS format Excel XLSX format
41 EPO Epidemiology Ontology Excel XLS format Excel XLSX format
42 ERO eagle-i resource ontology Excel XLS format Excel XLSX format
43 ExO Exposure ontology Excel XLS format Excel XLSX format
44 FAO Fungal gross anatomy Excel XLS format Excel XLSX format
45 FBBI Biological imaging methods Excel XLS format Excel XLSX format
46 FBBT Drosophila gross anatomy Excel XLS format Excel XLSX format
47 FBcv FlyBase Controlled Vocabulary Excel XLS format Excel XLSX format
48 FBdv Drosophila development Excel XLS format Excel XLSX format
49 FBsp Fly taxonomy Excel XLS format Excel XLSX format
50 FIX Physico-chemical methods and properties Excel XLS format Excel XLSX format
51 FLU Influenza Ontology Excel XLS format Excel XLSX format
52 FMA Foundational Model of Anatomy (subset) Excel XLS format Excel XLSX format
53 FYPO Fission Yeast Phenotype Ontology Excel XLS format Excel XLSX format
54 GAZ Gazetteer Excel XLS format Excel XLSX format
55 GEO Geographical Entity Ontology Excel XLS format Excel XLSX format
56 GO Gene Ontology Excel XLS format Excel XLSX format
57 HAO Hymenoptera Anatomy Ontology Excel XLS format Excel XLSX format
58 HINO Human Interaction Network Ontology Excel XLS format Excel XLSX format
59 HOM Homology Ontology Excel XLS format Excel XLSX format
60 HP human phenotype ontology Excel XLS format Excel XLSX format
61 HSAPDV Human Developmental Stages Excel XLS format Excel XLSX format
62 IAO Information Artifact Ontology Excel XLS format Excel XLSX format
63 IAO-Onto-Meta IAO Ontology Metadata Excel XLS format Excel XLSX format
64 ICO Informed Consent Ontology Excel XLS format Excel XLSX format
65 IDO Infectious disease Excel XLS format Excel XLSX format
66 IDOBRU Brucellosis Ontology Excel XLS format Excel XLSX format
67 IDOMAL Malaria Ontology Excel XLS format Excel XLSX format
68 IEV Event (INOH pathway ontology) Excel XLS format Excel XLSX format
69 IMR Molecule role (INOH Protein name/family name ontology) Excel XLS format Excel XLSX format
70 INO Interaction Network Ontology Excel XLS format Excel XLSX format
71 KISAO Kinetic Simulation Algorithm Ontology Excel XLS format Excel XLSX format
72 MA Mouse adult gross anatomy Excel XLS format Excel XLSX format
73 MAMO Mathematical modeling ontology Excel XLS format Excel XLSX format
74 MAT Minimal anatomical terminology Excel XLS format Excel XLSX format
75 MF Mental Functioning Ontology Excel XLS format Excel XLSX format
76 MFOEM Emotion Ontology Excel XLS format Excel XLSX format
77 MFOMD MFO Mental Disease Ontology Excel XLS format Excel XLSX format
78 MI Molecular interactions Excel XLS format Excel XLSX format
79 MIAPA MIAPA Ontology Excel XLS format Excel XLSX format
80 miRNAO microRNA Ontology Excel XLS format Excel XLSX format
81 MIRO Mosquito insecticide resistance Excel XLS format Excel XLSX format
82 MMO Measurement method ontology Excel XLS format Excel XLSX format
83 MMUSDV Mouse Developmental Stages Excel XLS format Excel XLSX format
84 MO Microarray experimental conditions Excel XLS format Excel XLSX format
85 MOD Protein modification Excel XLS format Excel XLSX format
86 MOP Molecular Process Ontology Excel XLS format Excel XLSX format
87 MP Mammalian phenotype Excel XLS format Excel XLSX format
88 MPATH Mouse pathology Excel XLS format Excel XLSX format
89 MRO MHC Restriction Ontology Excel XLS format Excel XLSX format
90 MS Mass spectrometry ontology Excel XLS format Excel XLSX format
91 NBO Neuro Behavior Ontology Excel XLS format Excel XLSX format
92 NCBITaxon NCBI organismal classification Excel XLS format Excel XLSX format
93 NCRO Non-Coding RNA Ontology Excel XLS format Excel XLSX format
94 NDF-RT National Drug File Reference Terminology Excel XLS format Excel XLSX format
95 NIF_Cell NIF Cell Excel XLS format Excel XLSX format
96 NIF_Dysfunction NIF Dysfunction Excel XLS format Excel XLSX format
97 NIF_GrossAnatomy NIF Gross Anatomy Excel XLS format Excel XLSX format
98 NMR NMR-instrument specific component of metabolomics investigations Excel XLS format Excel XLSX format
99 OAE Ontology of Adverse Events Excel XLS format Excel XLSX format
100 OBA Ontology of Biological Attributes Excel XLS format Excel XLSX format
101 OBCS Ontology of Biological and Clinical Statistics Excel XLS format Excel XLSX format
102 OBI Ontology for Biomedical Investigations Excel XLS format Excel XLSX format
103 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view Excel XLS format Excel XLSX format
104 OBIB Ontology for Biobanking Excel XLS format Excel XLSX format
105 OBIws OBI web service, development version Excel XLS format Excel XLSX format
106 OCRe OCRe Excel XLS format Excel XLSX format
107 ODNAE Ontologyof Drug Neuropathy Adverse Events Excel XLS format Excel XLSX format
108 OGG The Ontology of Genes and Genomes Excel XLS format Excel XLSX format
109 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana Excel XLS format Excel XLSX format
110 OGG-Bru Ontology of Genes and Genomes - Brucella Excel XLS format Excel XLSX format
111 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans Excel XLS format Excel XLSX format
112 OGG-Dm Ontology of Genes and Genomes - Fruit Fly Excel XLS format Excel XLSX format
113 OGG-Dr Ontology of Genes and Genomes - Zebrafish Excel XLS format Excel XLSX format
114 OGG-Mm Ontology of Genes and Genomes - Mouse Excel XLS format Excel XLSX format
115 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum Excel XLS format Excel XLSX format
116 OGG-Sc Ontology of Genes and Genomes - Yeast Excel XLS format Excel XLSX format
117 OGI Ontology for genetic interval Excel XLS format Excel XLSX format
118 OGMS Ontology for General Medical Science Excel XLS format Excel XLSX format
119 OGSF Ontology of Genetic Susceptibility Factor Excel XLS format Excel XLSX format
120 OHD Oral Health and Disease Ontology Excel XLS format Excel XLSX format
121 OLATDV Medaka Developmental Stages Excel XLS format Excel XLSX format
122 OMIABIS Ontologized MIABIS Excel XLS format Excel XLSX format
123 OMIT Ontology for MIRNA Target Excel XLS format Excel XLSX format
124 OMP Ontology of Microbial Phenotypes Excel XLS format Excel XLSX format
125 OMRSE Ontology of Medically Related Social Entities Excel XLS format Excel XLSX format
126 OPL Ontology for Parasite LifeCycle Excel XLS format Excel XLSX format
127 OVAE Ontology of Vaccine Adverse Events Excel XLS format Excel XLSX format
128 PATO Phenotypic quality Excel XLS format Excel XLSX format
129 PCO Population and Community Ontology Excel XLS format Excel XLSX format
130 PDUMDV Platynereis Developmental Stages Excel XLS format Excel XLSX format
131 PO Plant Ontology Excel XLS format Excel XLSX format
132 PORO Porifera Ontology Excel XLS format Excel XLSX format
133 PR PRotein Ontology (PRO) Excel XLS format Excel XLSX format
134 ProPreO Proteomics data and process provenance Excel XLS format Excel XLSX format
135 PW Pathway ontology Excel XLS format Excel XLSX format
136 REO Reagent Ontology Excel XLS format Excel XLSX format
137 REX Physico-chemical process Excel XLS format Excel XLSX format
138 RO Relations Ontology Excel XLS format Excel XLSX format
139 RS Rat Strain Ontology Excel XLS format Excel XLSX format
140 RXNO Name Reaction Ontology Excel XLS format Excel XLSX format
141 SAO Subcellular anatomy ontology Excel XLS format Excel XLSX format
142 SBO Systems Biology Excel XLS format Excel XLSX format
143 SEP Sample processing and separation techniques Excel XLS format Excel XLSX format
144 SIBO Social Insect Behavior Ontology Excel XLS format Excel XLSX format
145 SIO Semanticscience Integrated Ontology Excel XLS format Excel XLSX format
146 SO Sequence types and features Excel XLS format Excel XLSX format
147 SPD Spider Ontology Excel XLS format Excel XLSX format
148 STATO The Statistical Methods Ontology Excel XLS format Excel XLSX format
149 SWO Software ontology Excel XLS format Excel XLSX format
150 SYMP Symptom Ontology Excel XLS format Excel XLSX format
151 TADS Tick gross anatomy Excel XLS format Excel XLSX format
152 TAO Teleost Anatomy Ontology Excel XLS format Excel XLSX format
153 TAXRANK Taxonomic rank vocabulary Excel XLS format Excel XLSX format
154 TGMA Mosquito gross anatomy Excel XLS format Excel XLSX format
155 TO Plant Trait Ontology Excel XLS format Excel XLSX format
156 TRANS Pathogen Transmission Ontology Excel XLS format Excel XLSX format
157 TTO Teleost taxonomy Excel XLS format Excel XLSX format
158 UBERON Uberon multi-species anatomy ontology Excel XLS format Excel XLSX format
159 UO Units of measurement Excel XLS format Excel XLSX format
160 VariO Variation Ontology Excel XLS format Excel XLSX format
161 VHOG verteberate Homologous Organ Groups Excel XLS format Excel XLSX format
162 VICO Vaccination Informed Consent Ontology Excel XLS format Excel XLSX format
163 VIVO-ISF VIVO-ISF Excel XLS format Excel XLSX format
164 VO Vaccine Ontology Excel XLS format Excel XLSX format
165 VSAO Vertebrate Skeletal Anatomy Ontology Excel XLS format Excel XLSX format
166 VT Vertebrate trait Excel XLS format Excel XLSX format
167 VTO Vertebrate Taxonomy Ontology Excel XLS format Excel XLSX format
168 WBbt C. elegans gross anatomy Excel XLS format Excel XLSX format
169 WBLS C. elegans development Excel XLS format Excel XLSX format
170 WBPhenotype C. elegans phenotype Excel XLS format Excel XLSX format
171 XAO Xenopus anatomy and development Excel XLS format Excel XLSX format
172 XCO Experimental condition ontology Excel XLS format Excel XLSX format
173 YPO Yeast phenotypes Excel XLS format Excel XLSX format
174 ZFA Zebrafish anatomy and development Excel XLS format Excel XLSX format
175 ZFS Zebrafish developmental stages Excel XLS format Excel XLSX format

Please cite the following reference for Ontobee:

Xiang Z, Mungall C, Ruttenberg A, He Y. Ontobee: A Linked Data Server and Browser for Ontology Terms. Proceedings of the 2nd International Conference on Biomedical Ontologies (ICBO), July 28-30, 2011, Buffalo, NY, USA. Pages 279-281. URL: http://ceur-ws.org/Vol-833/paper48.pdf.