Welcome to Ontobee!
Ontobee: A web server aimed to facilitate ontology visualization, query, and development. Ontobee provides a user-friendly web interface for displaying the details and its hierarchy of a specific ontology term. Meanwhile, Ontobee provides a RDF source code for the particular web page, which supports remote query of the ontology term and the Semantic Web.
Currently Ontobee has been tested for the following ontologies:
| No. | Ontology Prefix | Ontology Full Name | List of Terms |
| 1 | AAO | Amphibian gross anatomy |  |
| 2 | AEO | Anatomical Entity Ontology | |
| 3 | AERO | Adverse Event Reporting Ontology | |
| 4 | APO | Ascomycete phenotype ontology | |
| 5 | ATO | Amphibian taxonomy | |
| 6 | BFO | Basic Formal Ontology | |
| 7 | BILA | Bilateria anatomy | |
| 8 | BSPO | Spatial Ontology | |
| 9 | BTO | BRENDA tissue / enzyme source | |
| 10 | CARO | Common Anatomy Reference Ontology | |
| 11 | CDAO | Comparative Data Analysis Ontology | |
| 12 | CHEBI | Chemical entities of biological interest | |
| 13 | CHEMINF | Chemical Information Ontology | |
| 14 | CL | Cell type | |
| 15 | CLO | Cell Line Ontology | |
| 16 | DC_CL | Dendritic cell | |
| 17 | DDANAT | Dictyostelium discoideum anatomy | |
| 18 | DOID | Human disease ontology | |
| 19 | ECO | Evidence codes | |
| 20 | EHDA | Human developmental anatomy, timed version | |
| 21 | EHDAA | Human developmental anatomy, abstract version | |
| 22 | EHDAA2 | Human developmental anatomy, abstract version, v2 | |
| 23 | EMAP | Mouse gross anatomy and development | |
| 24 | ENVO | Environment Ontology | |
| 25 | EO | Plant Environmental Conditions | |
| 26 | ERO | eagle-i resource ontology | |
| 27 | FAO | Fungal gross anatomy | |
| 28 | FBbi | Biological imaging methods | |
| 29 | FBbt | Drosophila gross anatomy | |
| 30 | FBcv | FlyBase Controlled Vocabulary | |
| 31 | FBdv | Drosophila development | |
| 32 | FBsp | Fly taxonomy | |
| 33 | FIX | Physico-chemical methods and properties | |
| 34 | FLU | Influenza Ontology | |
| 35 | FMA | Foundational Model of Anatomy (subset) | |
| 36 | FYPO | Fission Yeast Phenotype Ontology | |
| 37 | GO | Gene Ontology | |
| 38 | HAO | Hymenoptera Anatomy Ontology | |
| 39 | HOM | homology_ontology | |
| 40 | HP | human phenotype ontology | |
| 41 | IAO | Information Artifact Ontology | |
| 42 | IDO | Infectious disease | |
| 43 | IDOBRU | Brucellosis Ontology | |
| 44 | IDOMAL | Malaria Ontology | |
| 45 | INO | Interaction Network Ontology | |
| 46 | MA | Mouse adult gross anatomy | |
| 47 | MAT | Minimal anatomical terminology | |
| 48 | MFO | Medaka fish anatomy and development | |
| 49 | MI | Protein-protein interaction | |
| 50 | MO | Microarray experimental conditions | |
| 51 | MOD | Protein modification | |
| 52 | MP | Mammalian phenotype | |
| 53 | MPATH | Mouse pathology | |
| 54 | MS | Mass spectrometry | |
| 55 | NBO | Neuro Behavior Ontology | |
| 56 | NCBITaxon | NCBI organismal classification | |
| 57 | NIF_Cell | NIF Cell | |
| 58 | NIF_Dysfunction | NIF Dysfunction | |
| 59 | NIF_GrossAnatomy | NIF Gross Anatomy | |
| 60 | NMR | NMR-instrument specific component of metabolomics investigations | |
| 61 | OAE | Ontology of Adverse Events | |
| 62 | OBI | Ontology for biomedical investigations | |
| 63 | OBIws | OBI web service | |
| 64 | OBO_REL | OBO relationship types | |
| 65 | OGMS | Ontology for General Medical Science | |
| 66 | OMRSE | Ontology of Medically Related Social Entities | |
| 67 | OPL | Ontology for Parasite LifeCycle | |
| 68 | PATO | Phenotypic quality | |
| 69 | PO | Plant Ontology | |
| 70 | PORO | Porifera Ontology | |
| 71 | PR | PRotein Ontology (PRO) | |
| 72 | ProPreO | Proteomics data and process provenance | |
| 73 | PW | Pathway ontology | |
| 74 | REO | Reagent Ontology | |
| 75 | REX | Physico-chemical process | |
| 76 | RO | Relation ontology (dev) | |
| 77 | SAO | Subcellular anatomy ontology | |
| 78 | SBO | Systems Biology | |
| 79 | SO | Sequence types and features | |
| 80 | SOPHARM | Suggested Ontology for Pharmacogenomics | |
| 81 | SPD | Spider Ontology | |
| 82 | SWO | Software ontology | |
| 83 | SYMP | Symptom Ontology | |
| 84 | TADS | Tick gross anatomy | |
| 85 | TAO | Teleost Anatomy Ontology | |
| 86 | TAXRANK | Taxonomic rank vocabulary | |
| 87 | TGMA | Mosquito gross anatomy | |
| 88 | TO | Plant Trait Ontology | |
| 89 | TRANS | Pathogen transmission | |
| 90 | TTO | Teleost taxonomy | |
| 91 | UBERON | Uber anatomy ontology | |
| 92 | uberon_collected_metazoa | uberon_collected_metazoa | |
| 93 | UO | Units of measurement | |
| 94 | VAO | Vertebrate Musculoskeletal Anatomy Ontology | |
| 95 | vHOG | verteberate Homologous Organ Groups | |
| 96 | VO | Vaccine ontology | |
| 97 | WBbt | C. elegans gross anatomy | |
| 98 | WBls | C. elegans development | |
| 99 | WBPhenotype | C. elegans phenotype | |
| 100 | XAO | Xenopus anatomy and development | |
| 101 | YPO | Yeast phenotypes | |
| 102 | ZFA | Zebrafish anatomy and development | |
Please cite the following reference for Ontobee:
Xiang Z, Mungall C, Ruttenberg A, He Y. Ontobee: A Linked Data Server and Browser for Ontology Terms. International Conference on Biomedical Ontologies (ICBO), University at Buffalo, NY, July 26-30, 2011. Pages 279-281.
