Logo
Home Intro Statistics SPARQL Ontobeep Annotator Tutorial FAQs References Links Contact Acknowledge News

Welcome to Ontobee!

Ontobee: A linked data server designed for ontologies. Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis. Ontobee dynamically dereferences and presents individual ontology term URIs to (i) HTML web pages for user-friendly web browsing and navigation, and to (ii) RDF source code for Semantic Web applications. Ontobee is the default linked data server for most OBO Foundry library ontologies. Ontobee has also been used for many non-OBO ontologies.

Jump to http://purl.obolibrary.org/obo/

Currently Ontobee has been applied for the following ontologies:

No. Ontology Prefix Ontology Full Name OBO List of Terms
1 AEO Anatomical Entity Ontology L Excel XLSX format Tab Separated format
2 AGRO Agronomy Ontology L Excel XLSX format Tab Separated format
3 AMPHX The Amphioxus Development and Anatomy Ontology L Excel XLSX format Tab Separated format
4 APO Ascomycete phenotype ontology L Excel XLSX format Tab Separated format
5 APOLLO_SV Apollo Structured Vocabulary L Excel XLSX format Tab Separated format
6 ARO Antibiotic Resistance Ontology L Excel XLSX format Tab Separated format
7 BCGO Beta Cell Genomics Ontology L Excel XLSX format Tab Separated format
8 BCO Biological Collections Ontology L Excel XLSX format Tab Separated format
9 BFO Basic Formal Ontology F Excel XLSX format Tab Separated format
10 BFO11 Basic Formal Ontology (BFO) 1.1 L Excel XLSX format Tab Separated format
11 BSPO Biological Spatial Ontology L Excel XLSX format Tab Separated format
12 BTO BRENDA tissue / enzyme source L Excel XLSX format Tab Separated format
13 CARO Common Anatomy Reference Ontology L Excel XLSX format Tab Separated format
14 CDAO Comparative Data Analysis Ontology L Excel XLSX format Tab Separated format
15 CEPH Cephalopod Ontology L Excel XLSX format Tab Separated format
16 CHEBI Chemical Entities of Biological Interest F Excel XLSX format Tab Separated format
17 CHEMINF Chemical Information Ontology L Excel XLSX format Tab Separated format
18 CHIRO CHEBI Integrated Role Ontology L Excel XLSX format Tab Separated format
19 CHMO Chemical Methods Ontology L Excel XLSX format Tab Separated format
20 CIDO Coronavirus Infectious Disease Ontology L Excel XLSX format Tab Separated format
21 CIO Confidence Information Ontology L Excel XLSX format Tab Separated format
22 CL Cell Ontology L Excel XLSX format Tab Separated format
23 CLO Cell Line Ontology L Excel XLSX format Tab Separated format
24 CLO-hPSCreg Cell Line Ontology - Human Pluripotent Stem Cell Registry N Excel XLSX format Tab Separated format
25 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource N Excel XLSX format Tab Separated format
26 CLYH Clytia hemisphaerica Development and Anatomy Ontology L Excel XLSX format Tab Separated format
27 CMO Clinical measurement ontology L Excel XLSX format Tab Separated format
28 COB Core Ontology for Biology and Biomedicine L Excel XLSX format Tab Separated format
29 CRO Contributor Role Ontology L Excel XLSX format Tab Separated format
30 CTCAE-OAEview OAE CTCAE view N Excel XLSX format Tab Separated format
31 CTENO Ctenophore Ontology L Excel XLSX format Tab Separated format
32 CVDO Cardiovascular Disease Ontology L Excel XLSX format Tab Separated format
33 d-acts Ontology of Document Acts N Excel XLSX format Tab Separated format
34 DDANAT Dictyostelium discoideum anatomy L Excel XLSX format Tab Separated format
35 DDPHENO Dictyostelium discoideum phenotype ontology L Excel XLSX format Tab Separated format
36 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology L Excel XLSX format Tab Separated format
37 DOID Human Disease Ontology F Excel XLSX format Tab Separated format
38 DPO Drosophila Phenotype Ontology L Excel XLSX format Tab Separated format
39 DRON The Drug Ontology L Excel XLSX format Tab Separated format
40 DUO The Data Use Ontology L Excel XLSX format Tab Separated format
41 ECO Evidence ontology L Excel XLSX format Tab Separated format
42 ECOCORE An ontology of core ecological entities L Excel XLSX format Tab Separated format
43 ECTO Environmental conditions, treatments and exposures ontology L Excel XLSX format Tab Separated format
44 EDAM EMBRACE Data and Methods N Excel XLSX format Tab Separated format
45 EFO Experimental Factor Ontology N Excel XLSX format Tab Separated format
46 EHDAA2 Human developmental anatomy, abstract L Excel XLSX format Tab Separated format
47 EMAPA Mouse Developmental Anatomy Ontology L Excel XLSX format Tab Separated format
48 ENVO Environment Ontology L Excel XLSX format Tab Separated format
49 EPO Epidemiology Ontology L Excel XLSX format Tab Separated format
50 ERO eagle-i resource ontology L Excel XLSX format Tab Separated format
51 EUPATH VEuPathDB ontology L Excel XLSX format Tab Separated format
52 ExO Exposure ontology L Excel XLSX format Tab Separated format
53 FAO Fungal gross anatomy L Excel XLSX format Tab Separated format
54 FBBI Biological Imaging Methods Ontology L Excel XLSX format Tab Separated format
55 FBBT Drosophila gross anatomy L Excel XLSX format Tab Separated format
56 FBCV FlyBase Controlled Vocabulary L Excel XLSX format Tab Separated format
57 FBdv Drosophila development L Excel XLSX format Tab Separated format
58 FIX Physico-chemical methods and properties L Excel XLSX format Tab Separated format
59 FLOPO Flora Phenotype Ontology L Excel XLSX format Tab Separated format
60 FMA Foundational Model of Anatomy Ontology (subset) L Excel XLSX format Tab Separated format
61 FOBI FOBI L Excel XLSX format Tab Separated format
62 FOODON FOODON L Excel XLSX format Tab Separated format
63 FOVT FuTRES Ontology of Vertebrate Traits L Excel XLSX format Tab Separated format
64 FYPO Fission Yeast Phenotype Ontology L Excel XLSX format Tab Separated format
65 GAZ Gazetteer L Excel XLSX format Tab Separated format
66 GENEPIO Genomic Epidemiology Ontology L Excel XLSX format Tab Separated format
67 GENO Genotype Ontology L Excel XLSX format Tab Separated format
68 GEO Geographical Entity Ontology L Excel XLSX format Tab Separated format
69 GNO Glycan Naming and Subsumption Ontology (GNOme) L Excel XLSX format Tab Separated format
70 GO Gene Ontology F Excel XLSX format Tab Separated format
71 HANCESTRO Human Ancestry Ontology L Excel XLSX format Tab Separated format
72 HAO Hymenoptera Anatomy Ontology L Excel XLSX format Tab Separated format
73 HOM Homology Ontology L Excel XLSX format Tab Separated format
74 HP Human Phenotype Ontology L Excel XLSX format Tab Separated format
75 HSAPDV Human Developmental Stages L Excel XLSX format Tab Separated format
76 HTN Hypertension Ontology L Excel XLSX format Tab Separated format
77 IAO Information Artifact Ontology L Excel XLSX format Tab Separated format
78 IAO-Onto-Meta IAO Ontology Metadata N Excel XLSX format Tab Separated format
79 ICDO International Classification of Disease Ontology N Excel XLSX format Tab Separated format
80 ICEO Integrative and Conjugative Element Ontology L Excel XLSX format Tab Separated format
81 ICO Informed Consent Ontology L Excel XLSX format Tab Separated format
82 IDO Infectious Disease Ontology L Excel XLSX format Tab Separated format
83 IDOBRU Brucellosis Ontology N Excel XLSX format Tab Separated format
84 IDOMAL Malaria Ontology L Excel XLSX format Tab Separated format
85 INO Interaction Network Ontology L Excel XLSX format Tab Separated format
86 KISAO Kinetic Simulation Algorithm Ontology L Excel XLSX format Tab Separated format
87 KTAO Kidney Tissue Atlas Ontology N Excel XLSX format Tab Separated format
88 LABO clinical LABoratory Ontology L Excel XLSX format Tab Separated format
89 LINCS-CLOview CLO LINCS view N Excel XLSX format Tab Separated format
90 LTHIDO LTHIDO N Excel XLSX format Tab Separated format
91 MA Mouse adult gross anatomy L Excel XLSX format Tab Separated format
92 MAMO Mathematical modeling ontology L Excel XLSX format Tab Separated format
93 MAXO Medical Action Ontology L Excel XLSX format Tab Separated format
94 MCO Microbial Conditions Ontology L Excel XLSX format Tab Separated format
95 MF Mental Functioning Ontology L Excel XLSX format Tab Separated format
96 MFMO Mammalian Feeding Muscle Ontology L Excel XLSX format Tab Separated format
97 MFOEM Emotion Ontology L Excel XLSX format Tab Separated format
98 MFOMD Mental Disease Ontology L Excel XLSX format Tab Separated format
99 MI Molecular Interactions Controlled Vocabulary L Excel XLSX format Tab Separated format
100 MIAPA MIAPA Ontology L Excel XLSX format Tab Separated format
101 miRNAO microRNA Ontology L Excel XLSX format Tab Separated format
102 MIRO Mosquito insecticide resistance L Excel XLSX format Tab Separated format
103 MMO Measurement method ontology L Excel XLSX format Tab Separated format
104 MMUSDV Mouse Developmental Stages L Excel XLSX format Tab Separated format
105 MOD Protein modification L Excel XLSX format Tab Separated format
106 MONDO Mondo Disease Ontology L Excel XLSX format Tab Separated format
107 MOP Molecular Process Ontology L Excel XLSX format Tab Separated format
108 MP Mammalian Phenotype Ontology L Excel XLSX format Tab Separated format
109 MPATH Mouse pathology N Excel XLSX format Tab Separated format
110 MPIO Minimum PDDI Information Ontology L Excel XLSX format Tab Separated format
111 MRO MHC Restriction Ontology L Excel XLSX format Tab Separated format
112 MS Mass spectrometry ontology L Excel XLSX format Tab Separated format
113 NBO Neuro Behavior Ontology L Excel XLSX format Tab Separated format
114 NCBITaxon NCBI organismal classification L Excel XLSX format Tab Separated format
115 NCIT NCI Thesaurus OBO Edition L Excel XLSX format Tab Separated format
116 NCRO Non-Coding RNA Ontology L Excel XLSX format Tab Separated format
117 NDF-RT National Drug File Reference Terminology N Excel XLSX format Tab Separated format
118 NOMEN NOMEN - A nomenclatural ontology for biological names L Excel XLSX format Tab Separated format
119 OAE Ontology of Adverse Events L Excel XLSX format Tab Separated format
120 OARCS Ontology of Arthropod Circulatory Systems L Excel XLSX format Tab Separated format
121 OBA Ontology of Biological Attributes L Excel XLSX format Tab Separated format
122 OBCS Ontology of Biological and Clinical Statistics L Excel XLSX format Tab Separated format
123 OBI Ontology for Biomedical Investigations F Excel XLSX format Tab Separated format
124 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view N Excel XLSX format Tab Separated format
125 OBIB Ontology for Biobanking L Excel XLSX format Tab Separated format
126 OBIws OBI web service, development version N Excel XLSX format Tab Separated format
127 OCE Ontology of Chemical Elements N Excel XLSX format Tab Separated format
128 OCMR Ontology of Chinese Medicine for Rheumatism N Excel XLSX format Tab Separated format
129 OCVDAE Ontology of Cardiovascular Drug Adverse Events N Excel XLSX format Tab Separated format
130 ODAE Ontology of Drug Adverse Events N Excel XLSX format Tab Separated format
131 ODNAE Ontologyof Drug Neuropathy Adverse Events N Excel XLSX format Tab Separated format
132 OGG The Ontology of Genes and Genomes L Excel XLSX format Tab Separated format
133 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana N Excel XLSX format Tab Separated format
134 OGG-Bru Ontology of Genes and Genomes - Brucella N Excel XLSX format Tab Separated format
135 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans N Excel XLSX format Tab Separated format
136 OGG-Dm Ontology of Genes and Genomes - Fruit Fly N Excel XLSX format Tab Separated format
137 OGG-Dr Ontology of Genes and Genomes - Zebrafish N Excel XLSX format Tab Separated format
138 OGG-Mm Ontology of Genes and Genomes - Mouse N Excel XLSX format Tab Separated format
139 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum N Excel XLSX format Tab Separated format
140 OGG-Sc Ontology of Genes and Genomes - Yeast N Excel XLSX format Tab Separated format
141 OGI Ontology for genetic interval L Excel XLSX format Tab Separated format
142 OGMS Ontology for General Medical Science L Excel XLSX format Tab Separated format
143 OGSF Ontology of Genetic Susceptibility Factor L Excel XLSX format Tab Separated format
144 OHD The Oral Health and Disease Ontology L Excel XLSX format Tab Separated format
145 OHMI Ontology of Host-Microbiome Interactions L Excel XLSX format Tab Separated format
146 OHPI Ontology of Host Pathogen Interactions L Excel XLSX format Tab Separated format
147 OLATDV Medaka Developmental Stages L Excel XLSX format Tab Separated format
148 OLOBO Ontology for Linking Biological and Medical Ontologies N Excel XLSX format Tab Separated format
149 OMIABIS Ontologized MIABIS L Excel XLSX format Tab Separated format
150 OMIT Ontology for MIRNA Target L Excel XLSX format Tab Separated format
151 OMO OBO Metadata Ontology L Excel XLSX format Tab Separated format
152 OMP Ontology of Microbial Phenotypes L Excel XLSX format Tab Separated format
153 OMRSE Ontology of Medically Related Social Entities L Excel XLSX format Tab Separated format
154 ONTONEO Obstetric and Neonatal Ontology L Excel XLSX format Tab Separated format
155 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems L Excel XLSX format Tab Separated format
156 OPL Ontology for Parasite LifeCycle L Excel XLSX format Tab Separated format
157 OPMI Ontology of Precision Medicine and Investigation L Excel XLSX format Tab Separated format
158 ORNASEQ Ontology of RNA Sequencing L Excel XLSX format Tab Separated format
159 OSCI Ontology for Stem Cell Investigations N Excel XLSX format Tab Separated format
160 OVAE Ontology of Vaccine Adverse Events L Excel XLSX format Tab Separated format
161 PATO Phenotype And Trait Ontology F Excel XLSX format Tab Separated format
162 PCO Population and Community Ontology L Excel XLSX format Tab Separated format
163 PDRO The Prescription of Drugs Ontology L Excel XLSX format Tab Separated format
164 PDUMDV Platynereis Developmental Stages L Excel XLSX format Tab Separated format
165 PECO Plant Experimental Conditions Ontology L Excel XLSX format Tab Separated format
166 PHIPO Pathogen Host Interaction Phenotype Ontology L Excel XLSX format Tab Separated format
167 PLANA planaria-ontology L Excel XLSX format Tab Separated format
168 PLANP Planarian Phenotype Ontology L Excel XLSX format Tab Separated format
169 PNO Proper Name Ontology N Excel XLSX format Tab Separated format
170 PO Plant Ontology F Excel XLSX format Tab Separated format
171 PORO Porifera Ontology L Excel XLSX format Tab Separated format
172 PPO Plant Phenology Ontology L Excel XLSX format Tab Separated format
173 PR PRotein Ontology (PRO) F Excel XLSX format Tab Separated format
174 PW Pathway ontology L Excel XLSX format Tab Separated format
175 REX Physico-chemical process L Excel XLSX format Tab Separated format
176 RNAO RNA ontology L Excel XLSX format Tab Separated format
177 RO Relation Ontology L Excel XLSX format Tab Separated format
178 RS Rat Strain Ontology L Excel XLSX format Tab Separated format
179 RXNO Name Reaction Ontology L Excel XLSX format Tab Separated format
180 SBO Systems Biology Ontology L Excel XLSX format Tab Separated format
181 SDGIO Sustainable Development Goals Interface Ontology N Excel XLSX format Tab Separated format
182 SEPIO Scientific Evidence and Provenance Information Ontology L Excel XLSX format Tab Separated format
183 SIBO Social Insect Behavior Ontology L Excel XLSX format Tab Separated format
184 SIO Semanticscience Integrated Ontology N Excel XLSX format Tab Separated format
185 SO Sequence types and features ontology L Excel XLSX format Tab Separated format
186 SPD Spider Ontology L Excel XLSX format Tab Separated format
187 STATO The Statistical Methods Ontology L Excel XLSX format Tab Separated format
188 SWO Software ontology L Excel XLSX format Tab Separated format
189 SYMP Symptom Ontology L Excel XLSX format Tab Separated format
190 TADS Tick Anatomy Ontology L Excel XLSX format Tab Separated format
191 TAXRANK Taxonomic rank vocabulary L Excel XLSX format Tab Separated format
192 TGMA Mosquito gross anatomy ontology L Excel XLSX format Tab Separated format
193 TO Plant Trait Ontology L Excel XLSX format Tab Separated format
194 TRANS Pathogen Transmission Ontology L Excel XLSX format Tab Separated format
195 TSO Transportation System Ontology N Excel XLSX format Tab Separated format
196 TTO Teleost taxonomy ontology L Excel XLSX format Tab Separated format
197 TXPO Toxic Process Ontology L Excel XLSX format Tab Separated format
198 UBERON Uberon multi-species anatomy ontology L Excel XLSX format Tab Separated format
199 UO Units of measurement ontology L Excel XLSX format Tab Separated format
200 UPA Unipathway L Excel XLSX format Tab Separated format
201 UPHENO Unified phenotype ontology (uPheno) L Excel XLSX format Tab Separated format
202 VariO Variation Ontology L Excel XLSX format Tab Separated format
203 VICO Vaccination Informed Consent Ontology N Excel XLSX format Tab Separated format
204 VIO Vaccine Investigation Ontology N Excel XLSX format Tab Separated format
205 VIVO-ISF VIVO-ISF N Excel XLSX format Tab Separated format
206 VO Vaccine Ontology L Excel XLSX format Tab Separated format
207 VT Vertebrate trait ontology L Excel XLSX format Tab Separated format
208 VTO Vertebrate Taxonomy Ontology L Excel XLSX format Tab Separated format
209 WBbt C. elegans Gross Anatomy Ontology L Excel XLSX format Tab Separated format
210 WBLS C. elegans development ontology L Excel XLSX format Tab Separated format
211 WBPhenotype C. elegans phenotype L Excel XLSX format Tab Separated format
212 XAO Xenopus Anatomy Ontology F Excel XLSX format Tab Separated format
213 XCO Experimental condition ontology L Excel XLSX format Tab Separated format
214 XPO Xenopus Phenotype Ontology L Excel XLSX format Tab Separated format
215 ZECO Zebrafish Experimental Conditions Ontology L Excel XLSX format Tab Separated format
216 ZFA Zebrafish anatomy and development ontology F Excel XLSX format Tab Separated format
217 ZFS Zebrafish developmental stages ontology L Excel XLSX format Tab Separated format
218 ZP Zebrafish Phenotype Ontology L Excel XLSX format Tab Separated format

Please cite the following reference for Ontobee:

Ong E, Xiang Z, Zhao B, Liu Y, Lin Y, Zheng J, Mungall C, Courtot M, Ruttenberg A, He Y. Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query, and integrationNucleic Acid Research. 2017 Jan 4;45(D1):D347-D352. PMID: 27733503. PMCID: PMC5210626.

Ontobee ICBO proceeding paper:

Xiang Z, Mungall C, Ruttenberg A, He Y. Ontobee: A Linked Data Server and Browser for Ontology Terms. Proceedings of the 2nd International Conference on Biomedical Ontologies (ICBO), July 28-30, 2011, Buffalo, NY, USA. Pages 279-281. URL: http://ceur-ws.org/Vol-833/paper48.pdf.