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Welcome to Ontobee!

Ontobee: A linked data server designed for ontologies. Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis. Ontobee dynamically dereferences and presents individual ontology term URIs to (i) HTML web pages for user-friendly web browsing and navigation, and to (ii) RDF source code for Semantic Web applications. Ontobee is the default linked data server for most OBO Foundry library ontologies. Ontobee has also been used for many non-OBO ontologies.

Jump to http://purl.obolibrary.org/obo/

Currently Ontobee has been applied for the following ontologies:

No. Ontology Prefix Ontology Full Name OBO List of Terms
1 CHEBI Chemical Entities of Biological Interest F Excel XLSX format Tab Separated format
2 DOID Human Disease Ontology F Excel XLSX format Tab Separated format
3 GO Gene Ontology F Excel XLSX format Tab Separated format
4 OBI Ontology for Biomedical Investigations F Excel XLSX format Tab Separated format
5 PATO Phenotypic quality F Excel XLSX format Tab Separated format
6 PO Plant Ontology F Excel XLSX format Tab Separated format
7 PR PRotein Ontology (PRO) F Excel XLSX format Tab Separated format
8 XAO Xenopus anatomy and development F Excel XLSX format Tab Separated format
9 ZFA Zebrafish anatomy and development F Excel XLSX format Tab Separated format
10 AEO Anatomical Entity Ontology L Excel XLSX format Tab Separated format
11 AERO Adverse Event Reporting Ontology L Excel XLSX format Tab Separated format
12 APO Ascomycete phenotype ontology L Excel XLSX format Tab Separated format
13 BCGO Beta Cell Genomics Ontology L Excel XLSX format Tab Separated format
14 BCO Biological Collections Ontology L Excel XLSX format Tab Separated format
15 BFO Basic Formal Ontology L Excel XLSX format Tab Separated format
16 BFO11 Basic Formal Ontology (BFO) 1.1 L Excel XLSX format Tab Separated format
17 BSPO Biological Spatial Ontology L Excel XLSX format Tab Separated format
18 BTO BRENDA tissue / enzyme source L Excel XLSX format Tab Separated format
19 CARO Common Anatomy Reference Ontology L Excel XLSX format Tab Separated format
20 CDAO Comparative Data Analysis Ontology L Excel XLSX format Tab Separated format
21 CEPH Cephalopod Ontology L Excel XLSX format Tab Separated format
22 CHEMINF Chemical Information Ontology L Excel XLSX format Tab Separated format
23 CHMO Chemical Methods Ontology L Excel XLSX format Tab Separated format
24 CIO Confidence Information Ontology L Excel XLSX format Tab Separated format
25 CL Cell Ontology L Excel XLSX format Tab Separated format
26 CLO Cell Line Ontology L Excel XLSX format Tab Separated format
27 CMO Clinical measurement ontology L Excel XLSX format Tab Separated format
28 CTENO Ctenophore Ontology L Excel XLSX format Tab Separated format
29 CVDO Cardiovascular Disease Ontology L Excel XLSX format Tab Separated format
30 DDANAT Dictyostelium discoideum anatomy L Excel XLSX format Tab Separated format
31 DDPHENO Dictyostelium discoideum phenotype L Excel XLSX format Tab Separated format
32 DIDEO Drug Interaction and Evidence Ontology L Excel XLSX format Tab Separated format
33 DPO Drosophila Phenotype Ontology L Excel XLSX format Tab Separated format
34 DRON The Drug Ontology L Excel XLSX format Tab Separated format
35 ECO Evidence ontology L Excel XLSX format Tab Separated format
36 EHDAA2 Human developmental anatomy, abstract L Excel XLSX format Tab Separated format
37 EMAP Mouse gross anatomy and development, timed L Excel XLSX format Tab Separated format
38 EMAPA Mouse gross anatomy and development, timed L Excel XLSX format Tab Separated format
39 ENVO Environment Ontology L Excel XLSX format Tab Separated format
40 EO Plant Environment Ontology L Excel XLSX format Tab Separated format
41 EPO Epidemiology Ontology L Excel XLSX format Tab Separated format
42 ERO eagle-i resource ontology L Excel XLSX format Tab Separated format
43 ExO Exposure ontology L Excel XLSX format Tab Separated format
44 FAO Fungal gross anatomy L Excel XLSX format Tab Separated format
45 FBBI Biological imaging methods L Excel XLSX format Tab Separated format
46 FBBT Drosophila gross anatomy L Excel XLSX format Tab Separated format
47 FBCV FlyBase Controlled Vocabulary L Excel XLSX format Tab Separated format
48 FBdv Drosophila development L Excel XLSX format Tab Separated format
49 FIX Physico-chemical methods and properties L Excel XLSX format Tab Separated format
50 FLOPO Flora Phenotype Ontology L Excel XLSX format Tab Separated format
51 FLU Influenza Ontology L Excel XLSX format Tab Separated format
52 FMA Foundational Model of Anatomy (subset) L Excel XLSX format Tab Separated format
53 FYPO Fission Yeast Phenotype Ontology L Excel XLSX format Tab Separated format
54 GAZ Gazetteer L Excel XLSX format Tab Separated format
55 GEO Geographical Entity Ontology L Excel XLSX format Tab Separated format
56 HAO Hymenoptera Anatomy Ontology L Excel XLSX format Tab Separated format
57 HOM Homology Ontology L Excel XLSX format Tab Separated format
58 HP human phenotype ontology L Excel XLSX format Tab Separated format
59 HSAPDV Human Developmental Stages L Excel XLSX format Tab Separated format
60 IAO Information Artifact Ontology L Excel XLSX format Tab Separated format
61 IDO Infectious disease L Excel XLSX format Tab Separated format
62 IDOMAL Malaria Ontology L Excel XLSX format Tab Separated format
63 KISAO Kinetic Simulation Algorithm Ontology L Excel XLSX format Tab Separated format
64 MA Mouse adult gross anatomy L Excel XLSX format Tab Separated format
65 MAMO Mathematical modeling ontology L Excel XLSX format Tab Separated format
66 MF Mental Functioning Ontology L Excel XLSX format Tab Separated format
67 MFOEM Emotion Ontology L Excel XLSX format Tab Separated format
68 MFOMD MFO Mental Disease Ontology L Excel XLSX format Tab Separated format
69 MI Molecular interactions L Excel XLSX format Tab Separated format
70 MIAPA MIAPA Ontology L Excel XLSX format Tab Separated format
71 MIRO Mosquito insecticide resistance L Excel XLSX format Tab Separated format
72 MMO Measurement method ontology L Excel XLSX format Tab Separated format
73 MMUSDV Mouse Developmental Stages L Excel XLSX format Tab Separated format
74 MOD Protein modification L Excel XLSX format Tab Separated format
75 MOP Molecular Process Ontology L Excel XLSX format Tab Separated format
76 MP Mammalian phenotype L Excel XLSX format Tab Separated format
77 MRO MHC Restriction Ontology L Excel XLSX format Tab Separated format
78 MS Mass spectrometry ontology L Excel XLSX format Tab Separated format
79 NBO Neuro Behavior Ontology L Excel XLSX format Tab Separated format
80 NCBITaxon NCBI organismal classification L Excel XLSX format Tab Separated format
81 NCRO Non-Coding RNA Ontology L Excel XLSX format Tab Separated format
82 OAE Ontology of Adverse Events L Excel XLSX format Tab Separated format
83 OBA Ontology of Biological Attributes L Excel XLSX format Tab Separated format
84 OBCS Ontology of Biological and Clinical Statistics L Excel XLSX format Tab Separated format
85 OBIB Ontology for Biobanking L Excel XLSX format Tab Separated format
86 OGG The Ontology of Genes and Genomes L Excel XLSX format Tab Separated format
87 OGI Ontology for genetic interval L Excel XLSX format Tab Separated format
88 OGMS Ontology for General Medical Science L Excel XLSX format Tab Separated format
89 OGSF Ontology of Genetic Susceptibility Factor L Excel XLSX format Tab Separated format
90 OLATDV Medaka Developmental Stages L Excel XLSX format Tab Separated format
91 OMIABIS Ontologized MIABIS L Excel XLSX format Tab Separated format
92 OMIT Ontology for MIRNA Target L Excel XLSX format Tab Separated format
93 OMP Ontology of Microbial Phenotypes L Excel XLSX format Tab Separated format
94 OMRSE Ontology of Medically Related Social Entities L Excel XLSX format Tab Separated format
95 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems L Excel XLSX format Tab Separated format
96 OPL Ontology for Parasite LifeCycle L Excel XLSX format Tab Separated format
97 OVAE Ontology of Vaccine Adverse Events L Excel XLSX format Tab Separated format
98 PCO Population and Community Ontology L Excel XLSX format Tab Separated format
99 PDUMDV Platynereis Developmental Stages L Excel XLSX format Tab Separated format
100 PORO Porifera Ontology L Excel XLSX format Tab Separated format
101 PW Pathway ontology L Excel XLSX format Tab Separated format
102 REX Physico-chemical process L Excel XLSX format Tab Separated format
103 RO Relations Ontology L Excel XLSX format Tab Separated format
104 RS Rat Strain Ontology L Excel XLSX format Tab Separated format
105 RXNO Name Reaction Ontology L Excel XLSX format Tab Separated format
106 SBO Systems Biology L Excel XLSX format Tab Separated format
107 SEP Sample processing and separation techniques L Excel XLSX format Tab Separated format
108 SIBO Social Insect Behavior Ontology L Excel XLSX format Tab Separated format
109 SO Sequence types and features L Excel XLSX format Tab Separated format
110 SPD Spider Ontology L Excel XLSX format Tab Separated format
111 STATO The Statistical Methods Ontology L Excel XLSX format Tab Separated format
112 SWO Software ontology L Excel XLSX format Tab Separated format
113 SYMP Symptom Ontology L Excel XLSX format Tab Separated format
114 TADS Tick gross anatomy L Excel XLSX format Tab Separated format
115 TAXRANK Taxonomic rank vocabulary L Excel XLSX format Tab Separated format
116 TGMA Mosquito gross anatomy L Excel XLSX format Tab Separated format
117 TO Plant Trait Ontology L Excel XLSX format Tab Separated format
118 TRANS Pathogen Transmission Ontology L Excel XLSX format Tab Separated format
119 TTO Teleost taxonomy L Excel XLSX format Tab Separated format
120 UBERON Uberon multi-species anatomy ontology L Excel XLSX format Tab Separated format
121 UO Units of measurement L Excel XLSX format Tab Separated format
122 VO Vaccine Ontology L Excel XLSX format Tab Separated format
123 VT Vertebrate trait L Excel XLSX format Tab Separated format
124 VTO Vertebrate Taxonomy Ontology L Excel XLSX format Tab Separated format
125 VariO Variation Ontology L Excel XLSX format Tab Separated format
126 WBLS C. elegans development L Excel XLSX format Tab Separated format
127 WBPhenotype C. elegans phenotype L Excel XLSX format Tab Separated format
128 WBbt C. elegans gross anatomy L Excel XLSX format Tab Separated format
129 XCO Experimental condition ontology L Excel XLSX format Tab Separated format
130 ZFS Zebrafish developmental stages L Excel XLSX format Tab Separated format
131 miRNAO microRNA Ontology L Excel XLSX format Tab Separated format
132 ATO Amphibian taxonomy N Excel XLSX format Tab Separated format
133 BAO BioAssay Ontology N Excel XLSX format Tab Separated format
134 BILA Bilateria anatomy N Excel XLSX format Tab Separated format
135 DC_CL Dendritic cell N Excel XLSX format Tab Separated format
136 EHDA Human developmental anatomy, timed version N Excel XLSX format Tab Separated format
137 EHDAA Human developmental anatomy, abstract version N Excel XLSX format Tab Separated format
138 FBsp Fly taxonomy N Excel XLSX format Tab Separated format
139 HINO Human Interaction Network Ontology N Excel XLSX format Tab Separated format
140 IAO-Onto-Meta IAO Ontology Metadata N Excel XLSX format Tab Separated format
141 ICO Informed Consent Ontology N Excel XLSX format Tab Separated format
142 IEV Event (INOH pathway ontology) N Excel XLSX format Tab Separated format
143 IMR Molecule role (INOH Protein name/family name ontology) N Excel XLSX format Tab Separated format
144 INO Interaction Network Ontology N Excel XLSX format Tab Separated format
145 LINCS-CLOview CLO LINCS view N Excel XLSX format Tab Separated format
146 MAT Minimal anatomical terminology N Excel XLSX format Tab Separated format
147 MO Microarray experimental conditions N Excel XLSX format Tab Separated format
148 MPATH Mouse pathology N Excel XLSX format Tab Separated format
149 NIF_Cell NIF Cell N Excel XLSX format Tab Separated format
150 NIF_Dysfunction NIF Dysfunction N Excel XLSX format Tab Separated format
151 NIF_GrossAnatomy NIF Gross Anatomy N Excel XLSX format Tab Separated format
152 NMR NMR-instrument specific component of metabolomics investigations N Excel XLSX format Tab Separated format
153 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view N Excel XLSX format Tab Separated format
154 ODNAE Ontologyof Drug Neuropathy Adverse Events N Excel XLSX format Tab Separated format
155 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana N Excel XLSX format Tab Separated format
156 OGG-Bru Ontology of Genes and Genomes - Brucella N Excel XLSX format Tab Separated format
157 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans N Excel XLSX format Tab Separated format
158 OGG-Dm Ontology of Genes and Genomes - Fruit Fly N Excel XLSX format Tab Separated format
159 OGG-Dr Ontology of Genes and Genomes - Zebrafish N Excel XLSX format Tab Separated format
160 OGG-Mm Ontology of Genes and Genomes - Mouse N Excel XLSX format Tab Separated format
161 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum N Excel XLSX format Tab Separated format
162 OGG-Sc Ontology of Genes and Genomes - Yeast N Excel XLSX format Tab Separated format
163 ProPreO Proteomics data and process provenance N Excel XLSX format Tab Separated format
164 SAO Subcellular anatomy ontology N Excel XLSX format Tab Separated format
165 TAO Teleost Anatomy Ontology N Excel XLSX format Tab Separated format
166 VHOG verteberate Homologous Organ Groups N Excel XLSX format Tab Separated format
167 VICO Vaccination Informed Consent Ontology N Excel XLSX format Tab Separated format
168 VSAO Vertebrate Skeletal Anatomy Ontology N Excel XLSX format Tab Separated format
169 YPO Yeast phenotypes N Excel XLSX format Tab Separated format
170 d-acts Ontology of Document Acts N Excel XLSX format Tab Separated format
171 OHD Oral Health and Disease Ontology N Excel XLSX format Tab Separated format
172 EFO Experimental Factor Ontology N Excel XLSX format Tab Separated format
173 APOLLO_SV Apollo Structured Vocabulary N Excel XLSX format Tab Separated format
174 EDAM EMBRACE Data and Methods N Excel XLSX format Tab Separated format
175 REO Reagent Ontology N Excel XLSX format Tab Separated format
176 SIO Semanticscience Integrated Ontology N Excel XLSX format Tab Separated format
177 VIVO-ISF VIVO-ISF N Excel XLSX format Tab Separated format
178 OCRe OCRe N Excel XLSX format Tab Separated format
179 OBIws OBI web service, development version N Excel XLSX format Tab Separated format
180 NDF-RT National Drug File Reference Terminology N Excel XLSX format Tab Separated format
181 IDOBRU Brucellosis Ontology N Excel XLSX format Tab Separated format

Please cite the following reference for Ontobee:

Xiang Z, Mungall C, Ruttenberg A, He Y. Ontobee: A Linked Data Server and Browser for Ontology Terms. Proceedings of the 2nd International Conference on Biomedical Ontologies (ICBO), July 28-30, 2011, Buffalo, NY, USA. Pages 279-281. URL: http://ceur-ws.org/Vol-833/paper48.pdf.