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Welcome to Ontobee!

Ontobee: A linked data server designed for ontologies. Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis. Ontobee dynamically dereferences and presents individual ontology term URIs to (i) HTML web pages for user-friendly web browsing and navigation, and to (ii) RDF source code for Semantic Web applications. Ontobee is the default linked data server for most OBO Foundry library ontologies. Ontobee has also been used for many non-OBO ontologies.

Jump to http://purl.obolibrary.org/obo/

Currently Ontobee has been applied for the following ontologies:

No. Ontology Prefix Ontology Full Name OBO List of Terms
1 AEO Anatomical Entity Ontology L Excel XLSX format Tab Separated format
2 AGRO Agronomy Ontology L Excel XLSX format Tab Separated format
3 AISM Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM) L Excel XLSX format Tab Separated format
4 AMPHX The Amphioxus Development and Anatomy Ontology L Excel XLSX format Tab Separated format
5 APO Ascomycete phenotype ontology L Excel XLSX format Tab Separated format
6 APOLLO_SV Apollo Structured Vocabulary L Excel XLSX format Tab Separated format
7 ARO Antibiotic Resistance Ontology L Excel XLSX format Tab Separated format
8 BCGO Beta Cell Genomics Ontology L Excel XLSX format Tab Separated format
9 BCO Biological Collections Ontology L Excel XLSX format Tab Separated format
10 BFO Basic Formal Ontology F Excel XLSX format Tab Separated format
11 BFO11 Basic Formal Ontology (BFO) 1.1 L Excel XLSX format Tab Separated format
12 BSPO Biological Spatial Ontology L Excel XLSX format Tab Separated format
13 BTO BRENDA tissue / enzyme source L Excel XLSX format Tab Separated format
14 CARO Common Anatomy Reference Ontology L Excel XLSX format Tab Separated format
15 CDAO Comparative Data Analysis Ontology L Excel XLSX format Tab Separated format
16 CDNO Compositional Dietary Nutrition Ontology L Excel XLSX format Tab Separated format
17 CEPH Cephalopod Ontology L Excel XLSX format Tab Separated format
18 CHEBI Chemical Entities of Biological Interest F Excel XLSX format Tab Separated format
19 CHEMINF Chemical Information Ontology L Excel XLSX format Tab Separated format
20 CHIRO CHEBI Integrated Role Ontology L Excel XLSX format Tab Separated format
21 CHMO Chemical Methods Ontology L Excel XLSX format Tab Separated format
22 CIDO Coronavirus Infectious Disease Ontology L Excel XLSX format Tab Separated format
23 CIO Confidence Information Ontology L Excel XLSX format Tab Separated format
24 CL Cell Ontology L Excel XLSX format Tab Separated format
25 CLAO Collembola Anatomy Ontology L Excel XLSX format Tab Separated format
26 CLO Cell Line Ontology L Excel XLSX format Tab Separated format
27 CLO-hPSCreg Cell Line Ontology - Human Pluripotent Stem Cell Registry N Excel XLSX format Tab Separated format
28 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource N Excel XLSX format Tab Separated format
29 CLYH Clytia hemisphaerica Development and Anatomy Ontology L Excel XLSX format Tab Separated format
30 CMO Clinical measurement ontology L Excel XLSX format Tab Separated format
31 COB Core Ontology for Biology and Biomedicine L Excel XLSX format Tab Separated format
32 CRO Contributor Role Ontology L Excel XLSX format Tab Separated format
33 CTCAE-OAEview OAE CTCAE view N Excel XLSX format Tab Separated format
34 CTENO Ctenophore Ontology L Excel XLSX format Tab Separated format
35 CTO CTO: Core Ontology of Clinical Trials L Excel XLSX format Tab Separated format
36 CVDO Cardiovascular Disease Ontology L Excel XLSX format Tab Separated format
37 d-acts Ontology of Document Acts N Excel XLSX format Tab Separated format
38 DDANAT Dictyostelium discoideum anatomy L Excel XLSX format Tab Separated format
39 DDPHENO Dictyostelium discoideum phenotype ontology L Excel XLSX format Tab Separated format
40 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology L Excel XLSX format Tab Separated format
41 DOID Human Disease Ontology F Excel XLSX format Tab Separated format
42 DPO Drosophila Phenotype Ontology L Excel XLSX format Tab Separated format
43 DRON The Drug Ontology L Excel XLSX format Tab Separated format
44 DUO Data Use Ontology L Excel XLSX format Tab Separated format
45 ECAO The Echinoderm Anatomy and Development Ontology L Excel XLSX format Tab Separated format
46 ECO Evidence ontology L Excel XLSX format Tab Separated format
47 ECOCORE An ontology of core ecological entities L Excel XLSX format Tab Separated format
48 ECTO Environmental conditions, treatments and exposures ontology L Excel XLSX format Tab Separated format
49 EDAM EMBRACE Data and Methods N Excel XLSX format Tab Separated format
50 EFO Experimental Factor Ontology N Excel XLSX format Tab Separated format
51 EHDAA2 Human developmental anatomy, abstract L Excel XLSX format Tab Separated format
52 EMAPA Mouse Developmental Anatomy Ontology L Excel XLSX format Tab Separated format
53 ENVO Environment Ontology L Excel XLSX format Tab Separated format
54 EPO Epidemiology Ontology L Excel XLSX format Tab Separated format
55 ERO eagle-i resource ontology L Excel XLSX format Tab Separated format
56 EUPATH VEuPathDB ontology L Excel XLSX format Tab Separated format
57 ExO Exposure ontology L Excel XLSX format Tab Separated format
58 FAO Fungal gross anatomy L Excel XLSX format Tab Separated format
59 FBBI Biological Imaging Methods Ontology L Excel XLSX format Tab Separated format
60 FBBT Drosophila gross anatomy L Excel XLSX format Tab Separated format
61 FBCV FlyBase Controlled Vocabulary L Excel XLSX format Tab Separated format
62 FBdv Drosophila development L Excel XLSX format Tab Separated format
63 FIDEO Food Interactions with Drugs Evidence Ontology L Excel XLSX format Tab Separated format
64 FIX Physico-chemical methods and properties L Excel XLSX format Tab Separated format
65 FLOPO Flora Phenotype Ontology L Excel XLSX format Tab Separated format
66 FMA Foundational Model of Anatomy Ontology (subset) L Excel XLSX format Tab Separated format
67 FOBI FOBI L Excel XLSX format Tab Separated format
68 FOODON FOODON L Excel XLSX format Tab Separated format
69 FOVT FuTRES Ontology of Vertebrate Traits L Excel XLSX format Tab Separated format
70 FYPO Fission Yeast Phenotype Ontology L Excel XLSX format Tab Separated format
71 GAZ Gazetteer L Excel XLSX format Tab Separated format
72 GECKO Genomics Cohorts Knowledge Ontology L Excel XLSX format Tab Separated format
73 GENEPIO Genomic Epidemiology Ontology L Excel XLSX format Tab Separated format
74 GENO Genotype Ontology L Excel XLSX format Tab Separated format
75 GEO Geographical Entity Ontology L Excel XLSX format Tab Separated format
76 GNO Glycan Naming and Subsumption Ontology (GNOme) L Excel XLSX format Tab Separated format
77 GO Gene Ontology F Excel XLSX format Tab Separated format
78 GSSO Gender, Sex, and Sexual Orientation (GSSO) ontology L Excel XLSX format Tab Separated format
79 HANCESTRO Human Ancestry Ontology L Excel XLSX format Tab Separated format
80 HAO Hymenoptera Anatomy Ontology L Excel XLSX format Tab Separated format
81 HOM Homology Ontology L Excel XLSX format Tab Separated format
82 HP Human Phenotype Ontology L Excel XLSX format Tab Separated format
83 HSAPDV Human Developmental Stages L Excel XLSX format Tab Separated format
84 HSO Health Surveillance Ontology L Excel XLSX format Tab Separated format
85 HTN Hypertension Ontology L Excel XLSX format Tab Separated format
86 IAO Information Artifact Ontology L Excel XLSX format Tab Separated format
87 IAO-Onto-Meta IAO Ontology Metadata N Excel XLSX format Tab Separated format
88 ICDO International Classification of Disease Ontology N Excel XLSX format Tab Separated format
89 ICEO Integrative and Conjugative Element Ontology L Excel XLSX format Tab Separated format
90 ICO Informed Consent Ontology L Excel XLSX format Tab Separated format
91 IDO Infectious Disease Ontology L Excel XLSX format Tab Separated format
92 IDOBRU Brucellosis Ontology N Excel XLSX format Tab Separated format
93 IDOMAL Malaria Ontology L Excel XLSX format Tab Separated format
94 INO Interaction Network Ontology L Excel XLSX format Tab Separated format
95 KISAO Kinetic Simulation Algorithm Ontology L Excel XLSX format Tab Separated format
96 KTAO Kidney Tissue Atlas Ontology N Excel XLSX format Tab Separated format
97 LABO clinical LABoratory Ontology L Excel XLSX format Tab Separated format
98 LINCS-CLOview CLO LINCS view N Excel XLSX format Tab Separated format
99 LTHIDO LTHIDO N Excel XLSX format Tab Separated format
100 MA Mouse adult gross anatomy L Excel XLSX format Tab Separated format
101 MAMO Mathematical modeling ontology L Excel XLSX format Tab Separated format
102 MAXO Medical Action Ontology L Excel XLSX format Tab Separated format
103 MCO Microbial Conditions Ontology L Excel XLSX format Tab Separated format
104 MF Mental Functioning Ontology L Excel XLSX format Tab Separated format
105 MFMO Mammalian Feeding Muscle Ontology L Excel XLSX format Tab Separated format
106 MFOEM Emotion Ontology L Excel XLSX format Tab Separated format
107 MFOMD Mental Disease Ontology L Excel XLSX format Tab Separated format
108 MI Molecular Interactions Controlled Vocabulary L Excel XLSX format Tab Separated format
109 MIAPA MIAPA Ontology L Excel XLSX format Tab Separated format
110 MicrO Ontology of Prokaryotic Phenotypic and Metabolic Characters L Excel XLSX format Tab Separated format
111 miRNAO microRNA Ontology L Excel XLSX format Tab Separated format
112 MIRO Mosquito insecticide resistance L Excel XLSX format Tab Separated format
113 MMO Measurement method ontology L Excel XLSX format Tab Separated format
114 MMUSDV Mouse Developmental Stages L Excel XLSX format Tab Separated format
115 MOD Protein modification L Excel XLSX format Tab Separated format
116 MONDO Mondo Disease Ontology L Excel XLSX format Tab Separated format
117 MOP Molecular Process Ontology L Excel XLSX format Tab Separated format
118 MP Mammalian Phenotype Ontology L Excel XLSX format Tab Separated format
119 MPATH Mouse pathology N Excel XLSX format Tab Separated format
120 MPIO Minimum PDDI Information Ontology L Excel XLSX format Tab Separated format
121 MRO MHC Restriction Ontology L Excel XLSX format Tab Separated format
122 MS Mass spectrometry ontology L Excel XLSX format Tab Separated format
123 NBO Neuro Behavior Ontology L Excel XLSX format Tab Separated format
124 NCBITaxon NCBI organismal classification L Excel XLSX format Tab Separated format
125 NCIT NCI Thesaurus OBO Edition L Excel XLSX format Tab Separated format
126 NCRO Non-Coding RNA Ontology L Excel XLSX format Tab Separated format
127 NDF-RT National Drug File Reference Terminology N Excel XLSX format Tab Separated format
128 NOMEN NOMEN - A nomenclatural ontology for biological names L Excel XLSX format Tab Separated format
129 OAE Ontology of Adverse Events L Excel XLSX format Tab Separated format
130 OARCS Ontology of Arthropod Circulatory Systems L Excel XLSX format Tab Separated format
131 OBA Ontology of Biological Attributes L Excel XLSX format Tab Separated format
132 OBCS Ontology of Biological and Clinical Statistics L Excel XLSX format Tab Separated format
133 OBI Ontology for Biomedical Investigations F Excel XLSX format Tab Separated format
134 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view N Excel XLSX format Tab Separated format
135 OBIB Ontology for Biobanking L Excel XLSX format Tab Separated format
136 OBIws OBI web service, development version N Excel XLSX format Tab Separated format
137 OCE Ontology of Chemical Elements N Excel XLSX format Tab Separated format
138 OCMR Ontology of Chinese Medicine for Rheumatism N Excel XLSX format Tab Separated format
139 OCVDAE Ontology of Cardiovascular Drug Adverse Events N Excel XLSX format Tab Separated format
140 ODAE Ontology of Drug Adverse Events N Excel XLSX format Tab Separated format
141 ODNAE Ontologyof Drug Neuropathy Adverse Events N Excel XLSX format Tab Separated format
142 OGG The Ontology of Genes and Genomes L Excel XLSX format Tab Separated format
143 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana N Excel XLSX format Tab Separated format
144 OGG-Bru Ontology of Genes and Genomes - Brucella N Excel XLSX format Tab Separated format
145 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans N Excel XLSX format Tab Separated format
146 OGG-Dm Ontology of Genes and Genomes - Fruit Fly N Excel XLSX format Tab Separated format
147 OGG-Dr Ontology of Genes and Genomes - Zebrafish N Excel XLSX format Tab Separated format
148 OGG-Mm Ontology of Genes and Genomes - Mouse N Excel XLSX format Tab Separated format
149 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum N Excel XLSX format Tab Separated format
150 OGG-Sc Ontology of Genes and Genomes - Yeast N Excel XLSX format Tab Separated format
151 OGI Ontology for genetic interval L Excel XLSX format Tab Separated format
152 OGMS Ontology for General Medical Science L Excel XLSX format Tab Separated format
153 OGSF Ontology of Genetic Susceptibility Factor L Excel XLSX format Tab Separated format
154 OHD The Oral Health and Disease Ontology L Excel XLSX format Tab Separated format
155 OHMI Ontology of Host-Microbiome Interactions L Excel XLSX format Tab Separated format
156 OHPI Ontology of Host Pathogen Interactions L Excel XLSX format Tab Separated format
157 OLATDV Medaka Developmental Stages L Excel XLSX format Tab Separated format
158 OLOBO Ontology for Linking Biological and Medical Ontologies N Excel XLSX format Tab Separated format
159 OMIABIS Ontologized MIABIS L Excel XLSX format Tab Separated format
160 OMIT Ontology for MIRNA Target L Excel XLSX format Tab Separated format
161 OMO OBO Metadata Ontology L Excel XLSX format Tab Separated format
162 OMP Ontology of Microbial Phenotypes L Excel XLSX format Tab Separated format
163 OMRSE Ontology of Medically Related Social Entities L Excel XLSX format Tab Separated format
164 ONE Ontology for Nutritional Epidemiology L Excel XLSX format Tab Separated format
165 ONS Ontology for Nutritional Studies L Excel XLSX format Tab Separated format
166 ONTONEO Obstetric and Neonatal Ontology L Excel XLSX format Tab Separated format
167 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems L Excel XLSX format Tab Separated format
168 OPL Ontology for Parasite LifeCycle L Excel XLSX format Tab Separated format
169 OPMI Ontology of Precision Medicine and Investigation L Excel XLSX format Tab Separated format
170 ORNASEQ Ontology of RNA Sequencing L Excel XLSX format Tab Separated format
171 OSCI Ontology for Stem Cell Investigations N Excel XLSX format Tab Separated format
172 OVAE Ontology of Vaccine Adverse Events L Excel XLSX format Tab Separated format
173 PATO Phenotype And Trait Ontology F Excel XLSX format Tab Separated format
174 PCO Population and Community Ontology L Excel XLSX format Tab Separated format
175 PDRO The Prescription of Drugs Ontology L Excel XLSX format Tab Separated format
176 PDUMDV Platynereis Developmental Stages L Excel XLSX format Tab Separated format
177 PECO Plant Experimental Conditions Ontology L Excel XLSX format Tab Separated format
178 PHIPO Pathogen Host Interaction Phenotype Ontology L Excel XLSX format Tab Separated format
179 PLANA planaria-ontology L Excel XLSX format Tab Separated format
180 PLANP Planarian Phenotype Ontology L Excel XLSX format Tab Separated format
181 PNO Proper Name Ontology N Excel XLSX format Tab Separated format
182 PO Plant Ontology F Excel XLSX format Tab Separated format
183 PORO Porifera Ontology L Excel XLSX format Tab Separated format
184 PPO Plant Phenology Ontology L Excel XLSX format Tab Separated format
185 PR PRotein Ontology (PRO) F Excel XLSX format Tab Separated format
186 PSDO Performance Summary Display Ontology L Excel XLSX format Tab Separated format
187 PSO Plant Stress Ontology L Excel XLSX format Tab Separated format
188 PW Pathway ontology L Excel XLSX format Tab Separated format
189 RBO Radiation Biology Ontology L Excel XLSX format Tab Separated format
190 REX Physico-chemical process L Excel XLSX format Tab Separated format
191 RNAO RNA ontology L Excel XLSX format Tab Separated format
192 RO Relation Ontology L Excel XLSX format Tab Separated format
193 RS Rat Strain Ontology L Excel XLSX format Tab Separated format
194 RXNO Name Reaction Ontology L Excel XLSX format Tab Separated format
195 SBO Systems Biology Ontology L Excel XLSX format Tab Separated format
196 SCDO Sickle Cell Disease Ontology L Excel XLSX format Tab Separated format
197 SDGIO Sustainable Development Goals Interface Ontology N Excel XLSX format Tab Separated format
198 SEPIO Scientific Evidence and Provenance Information Ontology L Excel XLSX format Tab Separated format
199 SIBO Social Insect Behavior Ontology L Excel XLSX format Tab Separated format
200 SIO Semanticscience Integrated Ontology N Excel XLSX format Tab Separated format
201 SO Sequence types and features ontology L Excel XLSX format Tab Separated format
202 SPD Spider Ontology L Excel XLSX format Tab Separated format
203 STATO The Statistical Methods Ontology L Excel XLSX format Tab Separated format
204 SWO Software ontology L Excel XLSX format Tab Separated format
205 SYMP Symptom Ontology L Excel XLSX format Tab Separated format
206 TADS Tick Anatomy Ontology L Excel XLSX format Tab Separated format
207 TAXRANK Taxonomic rank vocabulary L Excel XLSX format Tab Separated format
208 TGMA Mosquito gross anatomy ontology L Excel XLSX format Tab Separated format
209 TO Plant Trait Ontology L Excel XLSX format Tab Separated format
210 TRANS Pathogen Transmission Ontology L Excel XLSX format Tab Separated format
211 TSO Transportation System Ontology N Excel XLSX format Tab Separated format
212 TTO Teleost taxonomy ontology L Excel XLSX format Tab Separated format
213 TXPO Toxic Process Ontology L Excel XLSX format Tab Separated format
214 UBERON Uberon multi-species anatomy ontology L Excel XLSX format Tab Separated format
215 UO Units of measurement ontology L Excel XLSX format Tab Separated format
216 UPA Unipathway L Excel XLSX format Tab Separated format
217 UPHENO Unified phenotype ontology (uPheno) L Excel XLSX format Tab Separated format
218 VariO Variation Ontology L Excel XLSX format Tab Separated format
219 VICO Vaccination Informed Consent Ontology N Excel XLSX format Tab Separated format
220 VIO Vaccine Investigation Ontology N Excel XLSX format Tab Separated format
221 VIVO-ISF VIVO-ISF N Excel XLSX format Tab Separated format
222 VO Vaccine Ontology L Excel XLSX format Tab Separated format
223 VT Vertebrate trait ontology L Excel XLSX format Tab Separated format
224 VTO Vertebrate Taxonomy Ontology L Excel XLSX format Tab Separated format
225 WBbt C. elegans Gross Anatomy Ontology L Excel XLSX format Tab Separated format
226 WBLS C. elegans development ontology L Excel XLSX format Tab Separated format
227 WBPhenotype C. elegans phenotype L Excel XLSX format Tab Separated format
228 XAO Xenopus Anatomy Ontology F Excel XLSX format Tab Separated format
229 XCO Experimental condition ontology L Excel XLSX format Tab Separated format
230 XPO Xenopus Phenotype Ontology L Excel XLSX format Tab Separated format
231 ZECO Zebrafish Experimental Conditions Ontology L Excel XLSX format Tab Separated format
232 ZFA Zebrafish anatomy and development ontology F Excel XLSX format Tab Separated format
233 ZFS Zebrafish developmental stages ontology L Excel XLSX format Tab Separated format
234 ZP Zebrafish Phenotype Ontology L Excel XLSX format Tab Separated format

Please cite the following reference for Ontobee:

Ong E, Xiang Z, Zhao B, Liu Y, Lin Y, Zheng J, Mungall C, Courtot M, Ruttenberg A, He Y. Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query, and integrationNucleic Acid Research. 2017 Jan 4;45(D1):D347-D352. PMID: 27733503. PMCID: PMC5210626.

Ontobee ICBO proceeding paper:

Xiang Z, Mungall C, Ruttenberg A, He Y. Ontobee: A Linked Data Server and Browser for Ontology Terms. Proceedings of the 2nd International Conference on Biomedical Ontologies (ICBO), July 28-30, 2011, Buffalo, NY, USA. Pages 279-281. URL: http://ceur-ws.org/Vol-833/paper48.pdf.