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Welcome to Ontobee!

Ontobee: A linked data server designed for ontologies. Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis. Ontobee dynamically dereferences and presents individual ontology term URIs to (i) HTML web pages for user-friendly web browsing and navigation, and to (ii) RDF source code for Semantic Web applications. Ontobee is the default linked data server for most OBO Foundry library ontologies. Ontobee has also been used for many non-OBO ontologies.

Jump to http://purl.obolibrary.org/obo/

Currently Ontobee has been applied for the following ontologies:

No. Ontology Prefix Ontology Full Name List of Terms
1 AEO Anatomical Entity Ontology Excel format
2 AERO Adverse Event Reporting Ontology Excel format
3 APO Ascomycete phenotype ontology Excel format
4 ATO Amphibian taxonomy Excel format
5 BCGO Beta Cell Genomics Ontology Excel format
6 BCO Biological Collections Ontology Excel format
7 BFO Basic Formal Ontology Excel format
8 BFO11 Basic Formal Ontology (BFO) 1.1 Excel format
9 BILA Bilateria anatomy Excel format
10 BTO BRENDA tissue / enzyme source Excel format
11 CARO Common Anatomy Reference Ontology Excel format
12 CDAO Comparative Data Analysis Ontology Excel format
13 CHEBI Chemical entities of biological interest Excel format
14 CHEMINF Chemical Information Ontology Excel format
15 CHMO Chemical Methods Ontology Excel format
16 CLO Cell Line Ontology Excel format
17 CMO Clinical measurement ontology Excel format
18 CVDO Cardiovascular Disease Ontology Excel format
19 d-acts Ontology of Document Acts Excel format
20 DC_CL Dendritic cell Excel format
21 DDANAT Dictyostelium discoideum anatomy Excel format
22 DOID Human disease ontology Excel format
23 DRON The Drug Ontology Excel format
24 ECO Evidence codes Excel format
25 EDAM EMBRACE Data and Methods Excel format
26 EFO Experimental Factor Ontology Excel format
27 EHDA Human developmental anatomy, timed version Excel format
28 EHDAA Human developmental anatomy, abstract version Excel format
29 EHDAA2 Human developmental anatomy, abstract version, v2 Excel format
30 EMAP Mouse gross anatomy and development, timed Excel format
31 EMAPA Mouse gross anatomy and development, abstract Excel format
32 ENVO Environment Ontology Excel format
33 EO Plant Environmental Conditions Excel format
34 EPO Epidemiology Ontology Excel format
35 ERO eagle-i resource ontology Excel format
36 FAO Fungal gross anatomy Excel format
37 FBbi Biological imaging methods Excel format
38 FBbt Drosophila gross anatomy Excel format
39 FBcv FlyBase Controlled Vocabulary Excel format
40 FBdv Drosophila development Excel format
41 FBsp Fly taxonomy Excel format
42 FIX Physico-chemical methods and properties Excel format
43 FLU Influenza Ontology Excel format
44 FMA Foundational Model of Anatomy (subset) Excel format
45 FYPO Fission Yeast Phenotype Ontology Excel format
46 GAZ Gazetteer Excel format
47 GO Gene Ontology Excel format
48 GRO Cereal Plant Gross Anatomy Excel format
49 GRO Cereal plant development Excel format
50 HAO Hymenoptera Anatomy Ontology Excel format
51 HINO Human Interaction Network Ontology Excel format
52 HOM homology_ontology Excel format
53 HP human phenotype ontology Excel format
54 IAO Information Artifact Ontology Excel format
55 ICO Informed Consent Ontology Excel format
56 IDO Infectious disease Excel format
57 IDOBRU Brucellosis Ontology Excel format
58 IDOMAL Malaria Ontology Excel format
59 IEV Event (INOH pathway ontology) Excel format
60 IMR Molecule role (INOH Protein name/family name ontology) Excel format
61 INO Interaction Network Ontology Excel format
62 MA Mouse adult gross anatomy Excel format
63 MAT Minimal anatomical terminology Excel format
64 MF Mental Functioning Ontology Excel format
65 MFO Medaka fish anatomy and development Excel format
66 MFOEM Emotion Ontology Excel format
67 MI Protein-protein interaction Excel format
68 MIAPA MIAPA Ontology Excel format
69 miRNAO microRNA Ontology Excel format
70 MIRO Mosquito insecticide resistance Excel format
71 MMO Measurement method ontology Excel format
72 MO Microarray experimental conditions Excel format
73 MOD Protein modification Excel format
74 MP Mammalian phenotype Excel format
75 MPATH Mouse pathology Excel format
76 MS Mass spectrometry Excel format
77 NBO Neuro Behavior Ontology Excel format
78 NCBITaxon NCBI organismal classification Excel format
79 NDF-RT National Drug File Reference Terminology Excel format
80 NIF_Cell NIF Cell Excel format
81 NIF_Dysfunction NIF Dysfunction Excel format
82 NIF_GrossAnatomy NIF Gross Anatomy Excel format
83 NMR NMR-instrument specific component of metabolomics investigations Excel format
84 OAE Ontology of Adverse Events Excel format
85 OBCS Ontology of Biological and Clinical Statistics (OBCS) Excel format
86 OBI Ontology for Biomedical Investigations Excel format
87 OBIws OBI web service, development version Excel format
88 OCRe OCRe Excel format
89 OGG Ontology of Genes and Genomes Excel format
90 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana Excel format
91 OGG-Bru Ontology of Genes and Genomes - Brucella Excel format
92 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans Excel format
93 OGG-Dm Ontology of Genes and Genomes - Fruit Fly Excel format
94 OGG-Dr Ontology of Genes and Genomes - Zebrafish Excel format
95 OGG-Mm Ontology of Genes and Genomes - Mouse Excel format
96 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum Excel format
97 OGG-Sc Ontology of Genes and Genomes - Yeast Excel format
98 OGI Ontology for genetic interval Excel format
99 OGMS Ontology for General Medical Science Excel format
100 OGSF Ontology of Genetic Susceptibility Factor Excel format
101 OHD Oral Health and Disease Ontology Excel format
102 OMIABIS Ontologized MIABIS Excel format
103 OMIT Ontology for MIRNA Target Prediction Excel format
104 OMRSE Ontology of Medically Related Social Entities Excel format
105 OPL Ontology for Parasite LifeCycle Excel format
106 OVAE Ontology of Vaccine Adverse Events Excel format
107 PATO Phenotypic quality Excel format
108 PCO Population and Community Ontology Excel format
109 PD_ST Platynereis stage ontology Excel format
110 PO Plant Ontology Excel format
111 PORO Porifera Ontology Excel format
112 PR PRotein Ontology (PRO) Excel format
113 ProPreO Proteomics data and process provenance Excel format
114 PW Pathway ontology Excel format
115 REO Reagent Ontology Excel format
116 REX Physico-chemical process Excel format
117 RO OBO Relation Ontology Excel format
118 RS Rat Strain Ontology Excel format
119 SAO Subcellular anatomy ontology Excel format
120 SEP Sample processing and separation techniques Excel format
121 SO Sequence types and features Excel format
122 SPD Spider Ontology Excel format
123 STATO STATistics Ontology (STATO) Excel format
124 SWO Software ontology Excel format
125 SYMP Symptom Ontology Excel format
126 TADS Tick gross anatomy Excel format
127 TAO Teleost Anatomy Ontology Excel format
128 TAXRANK Taxonomic rank vocabulary Excel format
129 TGMA Mosquito gross anatomy Excel format
130 TO Plant Trait Ontology Excel format
131 TRANS Pathogen transmission Excel format
132 TTO Teleost taxonomy Excel format
133 UBERON Uber anatomy ontology Excel format
134 uberon_collected_metazoa uberon_collected_metazoa Excel format
135 UO Units of measurement Excel format
136 VariO Variation Ontology Excel format
137 vHOG verteberate Homologous Organ Groups Excel format
138 VIVO-ISF VIVO-ISF Excel format
139 VO Vaccine ontology Excel format
140 VSAO Vertebrate Skeletal Anatomy Ontology Excel format
141 VTO Vertebrate Taxonomy Ontology Excel format
142 WBbt C. elegans gross anatomy Excel format
143 WBls C. elegans development Excel format
144 WBPhenotype C. elegans phenotype Excel format
145 XAO Xenopus anatomy and development Excel format
146 XCO Experimental condition ontology Excel format
147 YPO Yeast phenotypes Excel format
148 ZFA Zebrafish anatomy and development Excel format

Please cite the following reference for Ontobee:

Xiang Z, Mungall C, Ruttenberg A, He Y. Ontobee: A Linked Data Server and Browser for Ontology Terms. Proceedings of the 2nd International Conference on Biomedical Ontologies (ICBO), July 28-30, 2011, Buffalo, NY, USA. Pages 279-281. URL: http://ceur-ws.org/Vol-833/paper48.pdf.