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Welcome to Ontobee!

Ontobee: A web server aimed to facilitate ontology visualization, query, and development. Ontobee provides a user-friendly web interface for displaying the details and its hierarchy of a specific ontology term. Meanwhile, Ontobee provides a RDF source code for the particular web page, which supports remote query of the ontology term and the Semantic Web.

Jump to http://purl.obolibrary.org/obo/

Currently Ontobee has been tested for the following ontologies:

No. Ontology Prefix Ontology Full Name List of Terms
1 AAO Amphibian gross anatomy Excel format
2 AEO Anatomical Entity Ontology Excel format
3 AERO Adverse Event Reporting Ontology Excel format
4 APO Ascomycete phenotype ontology Excel format
5 APOLLO_SV Apollo Structured Vocabulary Excel format
6 ATO Amphibian taxonomy Excel format
7 BCGO Beta Cell Genomics Ontology Excel format
8 BCO Biological Collections Ontology Excel format
9 BFO Basic Formal Ontology Excel format
10 BFO11 Basic Formal Ontology (BFO) 1.1 Excel format
11 BILA Bilateria anatomy Excel format
12 BSPO Biological Spatial Ontology Excel format
13 BTO BRENDA tissue / enzyme source Excel format
14 CARO Common Anatomy Reference Ontology Excel format
15 CDAO Comparative Data Analysis Ontology Excel format
16 CHEBI Chemical entities of biological interest Excel format
17 CHEMINF Chemical Information Ontology Excel format
18 CHMO Chemical Methods Ontology Excel format
19 CL Cell type Excel format
20 CLO Cell Line Ontology Excel format
21 CMO Clinical measurement ontology Excel format
22 CVDO Cardiovascular Disease Ontology Excel format
23 DC_CL Dendritic cell Excel format
24 DDANAT Dictyostelium discoideum anatomy Excel format
25 DOID Human disease ontology Excel format
26 DRON The Drug Ontology Excel format
27 ECO Evidence codes Excel format
28 EFO Experimental Factor Ontology Excel format
29 EHDA Human developmental anatomy, timed version Excel format
30 EHDAA Human developmental anatomy, abstract version Excel format
31 EHDAA2 Human developmental anatomy, abstract version, v2 Excel format
32 EMAP Mouse gross anatomy and development Excel format
33 ENVO Environment Ontology Excel format
34 EO Plant Environmental Conditions Excel format
35 ERO eagle-i resource ontology Excel format
36 FAO Fungal gross anatomy Excel format
37 FBbi Biological imaging methods Excel format
38 FBbt Drosophila gross anatomy Excel format
39 FBcv FlyBase Controlled Vocabulary Excel format
40 FBdv Drosophila development Excel format
41 FBsp Fly taxonomy Excel format
42 FIX Physico-chemical methods and properties Excel format
43 FLU Influenza Ontology Excel format
44 FMA Foundational Model of Anatomy (subset) Excel format
45 FYPO Fission Yeast Phenotype Ontology Excel format
46 GO Gene Ontology Excel format
47 GRO Cereal Plant Gross Anatomy Excel format
48 GRO Cereal plant development Excel format
49 HAO Hymenoptera Anatomy Ontology Excel format
50 HINO Human Interaction Network Ontology Excel format
51 HOM homology_ontology Excel format
52 HP human phenotype ontology Excel format
53 IAO Information Artifact Ontology Excel format
54 IDO Infectious disease Excel format
55 IDOBRU Brucellosis Ontology Excel format
56 IDOMAL Malaria Ontology Excel format
57 IEV Event (INOH pathway ontology) Excel format
58 IMR Molecule role (INOH Protein name/family name ontology) Excel format
59 INO Interaction Network Ontology Excel format
60 MA Mouse adult gross anatomy Excel format
61 MAT Minimal anatomical terminology Excel format
62 MF Mental Functioning Ontology Excel format
63 MFO Medaka fish anatomy and development Excel format
64 MFOEM Emotion Ontology Excel format
65 MI Protein-protein interaction Excel format
66 MIAPA MIAPA Ontology Excel format
67 miRNAO microRNA Ontology Excel format
68 MIRO Mosquito insecticide resistance Excel format
69 MMO Measurement method ontology Excel format
70 MO Microarray experimental conditions Excel format
71 MOD Protein modification Excel format
72 MP Mammalian phenotype Excel format
73 MPATH Mouse pathology Excel format
74 MS Mass spectrometry Excel format
75 NBO Neuro Behavior Ontology Excel format
76 NCBITaxon NCBI organismal classification Excel format
77 NDF-RT National Drug File Reference Terminology Excel format
78 NIF_Cell NIF Cell Excel format
79 NIF_Dysfunction NIF Dysfunction Excel format
80 NIF_GrossAnatomy NIF Gross Anatomy Excel format
81 NMR NMR-instrument specific component of metabolomics investigations Excel format
82 OAE Ontology of Adverse Events Excel format
83 OBI Ontology for biomedical investigations Excel format
84 OBIws OBI web service, development version Excel format
85 OBO_REL OBO relationship types (legacy) Excel format
86 OCRe OCRe Excel format
87 OGI Ontology for genetic interval Excel format
88 OGMS Ontology for General Medical Science Excel format
89 OGSF Ontology of Genetic Susceptibility Factor Excel format
90 OHD Oral Health and Disease Ontology Excel format
91 OMRSE Ontology of Medically Related Social Entities Excel format
92 OPL Ontology for Parasite LifeCycle Excel format
93 OVAE Ontology of Vaccine Adverse Events Excel format
94 PATO Phenotypic quality Excel format
95 PCO Population and Community Ontology Excel format
96 PD_ST Platynereis stage ontology Excel format
97 PO Plant Ontology Excel format
98 PORO Porifera Ontology Excel format
99 PR PRotein Ontology (PRO) Excel format
100 ProPreO Proteomics data and process provenance Excel format
101 PW Pathway ontology Excel format
102 REO Reagent Ontology Excel format
103 REX Physico-chemical process Excel format
104 RO Relation ontology (dev) Excel format
105 RS Rat Strain Ontology Excel format
106 SAO Subcellular anatomy ontology Excel format
107 SEP Sample processing and separation techniques Excel format
108 SO Sequence types and features Excel format
109 SOPHARM Suggested Ontology for Pharmacogenomics Excel format
110 SPD Spider Ontology Excel format
111 SWO Software ontology Excel format
112 SYMP Symptom Ontology Excel format
113 TADS Tick gross anatomy Excel format
114 TAO Teleost Anatomy Ontology Excel format
115 TAXRANK Taxonomic rank vocabulary Excel format
116 TGMA Mosquito gross anatomy Excel format
117 TO Plant Trait Ontology Excel format
118 TRANS Pathogen transmission Excel format
119 TTO Teleost taxonomy Excel format
120 UBERON Uber anatomy ontology Excel format
121 uberon_collected_metazoa uberon_collected_metazoa Excel format
122 UO Units of measurement Excel format
123 VariO Variation Ontology Excel format
124 vHOG verteberate Homologous Organ Groups Excel format
125 VO Vaccine ontology Excel format
126 VSAO Vertebrate Skeletal Anatomy Ontology Excel format
127 WBbt C. elegans gross anatomy Excel format
128 WBls C. elegans development Excel format
129 WBPhenotype C. elegans phenotype Excel format
130 XAO Xenopus anatomy and development Excel format
131 XCO Experimental condition ontology Excel format
132 YPO Yeast phenotypes Excel format
133 ZFA Zebrafish anatomy and development Excel format
134 ZFS Zebrafish developmental stages Excel format

Please cite the following reference for Ontobee:

Xiang Z, Mungall C, Ruttenberg A, He Y. Ontobee: A Linked Data Server and Browser for Ontology Terms. International Conference on Biomedical Ontologies (ICBO), University at Buffalo, NY, July 26-30, 2011. Pages 279-281.