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Welcome to Ontobee!

Ontobee: A linked data server designed for ontologies. Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis. Ontobee dynamically dereferences and presents individual ontology term URIs to (i) HTML web pages for user-friendly web browsing and navigation, and to (ii) RDF source code for Semantic Web applications. Ontobee is the default linked data server for most OBO Foundry library ontologies. Ontobee has also been used for many non-OBO ontologies.

Jump to http://purl.obolibrary.org/obo/

Currently Ontobee has been applied for the following ontologies:

No. Ontology Prefix Ontology Full Name List of Terms
1 AEO Anatomical Entity Ontology Excel format
2 AERO Adverse Event Reporting Ontology Excel format
3 APO Ascomycete phenotype ontology Excel format
4 APOLLO_SV Apollo Structured Vocabulary Excel format
5 ATO Amphibian taxonomy Excel format
6 BCGO Beta Cell Genomics Ontology Excel format
7 BCO Biological Collections Ontology Excel format
8 BFO Basic Formal Ontology Excel format
9 BFO11 Basic Formal Ontology (BFO) 1.1 Excel format
10 BILA Bilateria anatomy Excel format
11 BSPO Biological Spatial Ontology Excel format
12 BTO BRENDA tissue / enzyme source Excel format
13 CARO Common Anatomy Reference Ontology Excel format
14 CDAO Comparative Data Analysis Ontology Excel format
15 CHEBI Chemical entities of biological interest Excel format
16 CHEMINF Chemical Information Ontology Excel format
17 CHMO Chemical Methods Ontology Excel format
18 CL Cell type Excel format
19 CLO Cell Line Ontology Excel format
20 CMO Clinical measurement ontology Excel format
21 CVDO Cardiovascular Disease Ontology Excel format
22 DC_CL Dendritic cell Excel format
23 DDANAT Dictyostelium discoideum anatomy Excel format
24 DOID Human disease ontology Excel format
25 DRON The Drug Ontology Excel format
26 ECO Evidence codes Excel format
27 EFO Experimental Factor Ontology Excel format
28 EHDA Human developmental anatomy, timed version Excel format
29 EHDAA Human developmental anatomy, abstract version Excel format
30 EHDAA2 Human developmental anatomy, abstract version, v2 Excel format
31 EMAP Mouse gross anatomy and development, timed Excel format
32 EMAPA Mouse gross anatomy and development, abstract Excel format
33 ENVO Environment Ontology Excel format
34 EO Plant Environmental Conditions Excel format
35 EPO Epidemiology Ontology Excel format
36 ERO eagle-i resource ontology Excel format
37 FAO Fungal gross anatomy Excel format
38 FBbi Biological imaging methods Excel format
39 FBbt Drosophila gross anatomy Excel format
40 FBcv FlyBase Controlled Vocabulary Excel format
41 FBdv Drosophila development Excel format
42 FBsp Fly taxonomy Excel format
43 FIX Physico-chemical methods and properties Excel format
44 FLU Influenza Ontology Excel format
45 FMA Foundational Model of Anatomy (subset) Excel format
46 FYPO Fission Yeast Phenotype Ontology Excel format
47 GAZ Gazetteer Excel format
48 GO Gene Ontology Excel format
49 GRO Cereal Plant Gross Anatomy Excel format
50 GRO Cereal plant development Excel format
51 HAO Hymenoptera Anatomy Ontology Excel format
52 HINO Human Interaction Network Ontology Excel format
53 HOM homology_ontology Excel format
54 HP human phenotype ontology Excel format
55 IAO Information Artifact Ontology Excel format
56 IDO Infectious disease Excel format
57 IDOBRU Brucellosis Ontology Excel format
58 IDOMAL Malaria Ontology Excel format
59 IEV Event (INOH pathway ontology) Excel format
60 IMR Molecule role (INOH Protein name/family name ontology) Excel format
61 INO Interaction Network Ontology Excel format
62 MA Mouse adult gross anatomy Excel format
63 MAT Minimal anatomical terminology Excel format
64 MF Mental Functioning Ontology Excel format
65 MFO Medaka fish anatomy and development Excel format
66 MFOEM Emotion Ontology Excel format
67 MI Protein-protein interaction Excel format
68 MIAPA MIAPA Ontology Excel format
69 miRNAO microRNA Ontology Excel format
70 MIRO Mosquito insecticide resistance Excel format
71 MMO Measurement method ontology Excel format
72 MO Microarray experimental conditions Excel format
73 MOD Protein modification Excel format
74 MP Mammalian phenotype Excel format
75 MPATH Mouse pathology Excel format
76 MS Mass spectrometry Excel format
77 NBO Neuro Behavior Ontology Excel format
78 NCBITaxon NCBI organismal classification Excel format
79 NDF-RT National Drug File Reference Terminology Excel format
80 NIF_Cell NIF Cell Excel format
81 NIF_Dysfunction NIF Dysfunction Excel format
82 NIF_GrossAnatomy NIF Gross Anatomy Excel format
83 NMR NMR-instrument specific component of metabolomics investigations Excel format
84 OAE Ontology of Adverse Events Excel format
85 OBI Ontology for Biomedical Investigations Excel format
86 OBIws OBI web service, development version Excel format
87 OCRe OCRe Excel format
88 OGG Ontology of Genes and Genomes Excel format
89 OGI Ontology for genetic interval Excel format
90 OGMS Ontology for General Medical Science Excel format
91 OGSF Ontology of Genetic Susceptibility Factor Excel format
92 OHD Oral Health and Disease Ontology Excel format
93 OMIT Ontology for MIRNA Target Prediction Excel format
94 OMRSE Ontology of Medically Related Social Entities Excel format
95 OPL Ontology for Parasite LifeCycle Excel format
96 OVAE Ontology of Vaccine Adverse Events Excel format
97 PATO Phenotypic quality Excel format
98 PCO Population and Community Ontology Excel format
99 PD_ST Platynereis stage ontology Excel format
100 PO Plant Ontology Excel format
101 PORO Porifera Ontology Excel format
102 PR PRotein Ontology (PRO) Excel format
103 ProPreO Proteomics data and process provenance Excel format
104 PW Pathway ontology Excel format
105 REO Reagent Ontology Excel format
106 REX Physico-chemical process Excel format
107 RO OBO Relation Ontology Excel format
108 RS Rat Strain Ontology Excel format
109 SAO Subcellular anatomy ontology Excel format
110 SEP Sample processing and separation techniques Excel format
111 SO Sequence types and features Excel format
112 SPD Spider Ontology Excel format
113 SWO Software ontology Excel format
114 SYMP Symptom Ontology Excel format
115 TADS Tick gross anatomy Excel format
116 TAO Teleost Anatomy Ontology Excel format
117 TAXRANK Taxonomic rank vocabulary Excel format
118 TGMA Mosquito gross anatomy Excel format
119 TO Plant Trait Ontology Excel format
120 TRANS Pathogen transmission Excel format
121 TTO Teleost taxonomy Excel format
122 UBERON Uber anatomy ontology Excel format
123 uberon_collected_metazoa uberon_collected_metazoa Excel format
124 UO Units of measurement Excel format
125 VariO Variation Ontology Excel format
126 vHOG verteberate Homologous Organ Groups Excel format
127 VIVO-ISF VIVO-ISF Excel format
128 VO Vaccine ontology Excel format
129 VSAO Vertebrate Skeletal Anatomy Ontology Excel format
130 VTO Vertebrate Taxonomy Ontology Excel format
131 WBbt C. elegans gross anatomy Excel format
132 WBls C. elegans development Excel format
133 WBPhenotype C. elegans phenotype Excel format
134 XAO Xenopus anatomy and development Excel format
135 XCO Experimental condition ontology Excel format
136 YPO Yeast phenotypes Excel format
137 ZFA Zebrafish anatomy and development Excel format

Please cite the following reference for Ontobee:

Xiang Z, Mungall C, Ruttenberg A, He Y. Ontobee: A Linked Data Server and Browser for Ontology Terms. Proceedings of the 2nd International Conference on Biomedical Ontologies (ICBO), July 28-30, 2011, Buffalo, NY, USA. Pages 279-281. URL: http://ceur-ws.org/Vol-833/paper48.pdf.