<?xml version="1.0"?>
<?xml-stylesheet type="text/xsl" href="https://ontobee.org/ontology/view/GO?iri=http://purl.obolibrary.org/obo/GO_0003700"?>
<rdf:RDF xmlns="http://www.w3.org/2002/07/owl#"
     xml:base="http://www.w3.org/2002/07/owl"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:go="http://purl.obolibrary.org/obo/go#"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:ns4="http://purl.obolibrary.org/obo/"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:dc="http://purl.org/dc/elements/1.1/">
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/go#goslim_candida"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/go#goslim_yeast"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000233"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/go#goslim_drosophila"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/go#goslim_mouse"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/go#goslim_plant"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasOBONamespace"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/go#goslim_agr"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#created_by"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#creation_date"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/go#goslim_chembl"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasAlternativeId"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym"/>
    <AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset"/>
    <AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/go#goslim_metagenomics"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Datatypes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Object Properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/BFO_0000050 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050">
        <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
        <rdfs:label>part of</rdfs:label>
    </ObjectProperty>
    


    <!-- http://purl.obolibrary.org/obo/BFO_0000051 -->

    <ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000051">
        <rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
        <rdfs:label>has part</rdfs:label>
    </ObjectProperty>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://purl.obolibrary.org/obo/GO_0000976 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/GO_0000976">
        <rdfs:label>transcription cis-regulatory region binding</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/GO_0003700 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/GO_0003700">
        <rdfs:label>DNA-binding transcription factor activity</rdfs:label>
        <equivalentClass>
            <Class>
                <intersectionOf rdf:parseType="Collection">
                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/GO_0140110"/>
                    <Restriction>
                        <onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
                        <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/GO_0006355"/>
                    </Restriction>
                    <Restriction>
                        <onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
                        <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/GO_0000976"/>
                    </Restriction>
                </intersectionOf>
            </Class>
        </equivalentClass>
        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0140110"/>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/GO_0000976"/>
            </Restriction>
        </rdfs:subClassOf>
        <rdfs:subClassOf>
            <Restriction>
                <onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
                <someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/GO_0006355"/>
            </Restriction>
        </rdfs:subClassOf>
        <ns4:IAO_0000233 rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/geneontology/go-ontology/issues/15704</ns4:IAO_0000233>
        <ns4:IAO_0000233 rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/geneontology/go-ontology/issues/16534</ns4:IAO_0000233>
        <ns4:IAO_0000233 rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/geneontology/go-ontology/issues/20253</ns4:IAO_0000233>
        <rdfs:comment>Usage guidance: Most DNA-binding transcription factors do not have enzymatic activity. The presence of specific DNA-binding domains known to be present in DNA-binding transcription factors (HOX, GATA etc) should be used to help decide whether a protein is a DNA binding transcription factor or a coregulator. If a protein has an enzymatic activity (for example, ubiquitin ligase, histone acetyl transferase) and no known DNA binding domain, consider annotating to GO:0003712 transcription coregulator activity. Special care should be taken with proteins containing zinc fingers, Myb/SANT and ARID domains, since only a subset of proteins containing these domains directly and selectively bind to regulatory DNA motifs in cis-regulatory regions.</rdfs:comment>
        <oboInOwl:hasAlternativeId>GO:0001199</oboInOwl:hasAlternativeId>
        <oboInOwl:hasAlternativeId>GO:0001131</oboInOwl:hasAlternativeId>
        <oboInOwl:hasOBONamespace>molecular_function</oboInOwl:hasOBONamespace>
        <oboInOwl:hasNarrowSynonym>transcription factor activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding</oboInOwl:hasNarrowSynonym>
        <oboInOwl:hasAlternativeId>GO:0001151</oboInOwl:hasAlternativeId>
        <oboInOwl:hasAlternativeId>GO:0001130</oboInOwl:hasAlternativeId>
        <oboInOwl:hasExactSynonym>gene-specific transcription factor activity</oboInOwl:hasExactSynonym>
        <oboInOwl:hasAlternativeId>GO:0001071</oboInOwl:hasAlternativeId>
        <oboInOwl:hasNarrowSynonym>transcription factor activity, bacterial-type RNA polymerase transcription enhancer sequence-specific binding</oboInOwl:hasNarrowSynonym>
        <oboInOwl:created_by>krc</oboInOwl:created_by>
        <oboInOwl:hasNarrowSynonym>bacterial-type DNA binding transcription factor activity</oboInOwl:hasNarrowSynonym>
        <oboInOwl:hasNarrowSynonym>transcription factor activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding</oboInOwl:hasNarrowSynonym>
        <oboInOwl:hasDbXref>Reactome:R-HSA-163666</oboInOwl:hasDbXref>
        <oboInOwl:creation_date>2010-10-21T04:37:54Z</oboInOwl:creation_date>
        <oboInOwl:hasNarrowSynonym>bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity</oboInOwl:hasNarrowSynonym>
        <oboInOwl:hasNarrowSynonym>bacterial-type RNA polymerase transcription enhancer sequence-specific DNA binding transcription factor activity</oboInOwl:hasNarrowSynonym>
        <oboInOwl:hasNarrowSynonym>metal ion regulated sequence-specific DNA binding transcription factor activity</oboInOwl:hasNarrowSynonym>
        <oboInOwl:hasBroadSynonym>transcription factor activity</oboInOwl:hasBroadSynonym>
        <oboInOwl:hasExactSynonym>sequence-specific DNA binding transcription factor activity</oboInOwl:hasExactSynonym>
        <oboInOwl:hasAlternativeId>GO:0001204</oboInOwl:hasAlternativeId>
        <oboInOwl:hasNarrowSynonym>sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity</oboInOwl:hasNarrowSynonym>
        <oboInOwl:hasAlternativeId>GO:0000130</oboInOwl:hasAlternativeId>
        <oboInOwl:hasNarrowSynonym>transcription factor activity, metal ion regulated sequence-specific DNA binding</oboInOwl:hasNarrowSynonym>
        <oboInOwl:hasBroadSynonym>nucleic acid binding transcription factor activity</oboInOwl:hasBroadSynonym>
        <oboInOwl:hasExactSynonym>DNA binding transcription factor activity</oboInOwl:hasExactSynonym>
        <oboInOwl:hasNarrowSynonym>metal ion regulated sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity</oboInOwl:hasNarrowSynonym>
        <ns4:IAO_0000115>A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.</ns4:IAO_0000115>
        <oboInOwl:hasNarrowSynonym>bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding</oboInOwl:hasNarrowSynonym>
        <oboInOwl:hasNarrowSynonym>bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding</oboInOwl:hasNarrowSynonym>
        <oboInOwl:id>GO:0003700</oboInOwl:id>
        <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_agr"/>
        <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_candida"/>
        <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_chembl"/>
        <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_drosophila"/>
        <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_metagenomics"/>
        <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_mouse"/>
        <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_plant"/>
        <oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/go#goslim_yeast"/>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/GO_0006355 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/GO_0006355">
        <rdfs:label>regulation of DNA-templated transcription</rdfs:label>
    </Class>
    


    <!-- http://purl.obolibrary.org/obo/GO_0140110 -->

    <Class rdf:about="http://purl.obolibrary.org/obo/GO_0140110">
        <rdfs:label>transcription regulator activity</rdfs:label>
    </Class>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.2.4.1806) http://owlapi.sourceforge.net -->



