intergenic_variant
upstream_gene_variant
2010-03-24T09:49:13Z
A sequence variant located 5' of a gene.
ANNOVAR:upstream
Different groups annotate up and downstream to different lengths. The subtypes are specific and are backed up with cross references.
Jannovar:upstream_gene_variant
SO:0001631
VEP:upstream_gene_variant
http://snpeff.sourceforge.net/SnpEff_manual.html
http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences
kareneilbeck
sequence
snpEff:UPSTREAM
upstream gene variant