Ontobee: uberon

Uberon multi-species anatomy ontology

Ontology: UBERON

IRI: http://purl.obolibrary.org/obo/uberon.owl
OBO Foundry: Library
Download: http://purl.obolibrary.org/obo/uberon.owl
Home: http://uberon.org
Documentation: http://uberon.org
Contact: cjmungall@lbl.gov
Help: https://lists.sourceforge.net/lists/listinfo/obo-anatomy
Description: An integrated cross-species anatomy ontology covering animals and bridging multiple species-specific ontologies

Annotations

comment: Includes Ontology(OntologyID(OntologyIRI(< http://purl.obolibrary.org/obo/TEMP>) VersionIRI(<null>))) [Axioms: 437 Logical Axioms: 0]
comment: Includes Ontology(OntologyID(OntologyIRI(< http://purl.obolibrary.org/obo/uberon-bridge-to-bfo.owl>) VersionIRI(<null>))) [Axioms: 20 Logical Axioms: 9]
comment: Includes Ontology(OntologyID(OntologyIRI(< http://purl.obolibrary.org/obo/uberon/reflexivity_axioms.owl>) VersionIRI(<null>))) [Axioms: 2 Logical Axioms: 2]
comment: Includes Ontology(OntologyID(OntologyIRI(< http://purl.obolibrary.org/obo/uberon/insect-anatomy.owl>) VersionIRI(<null>))) [Axioms: 2098 Logical Axioms: 650]
comment: Includes Ontology(OntologyID(OntologyIRI(< http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 26298 Logical Axioms: 4860]
contributor: Alan Ruttenberg, Bill Bug, James Malone, George Gkoutos, Yvonne Bradford, David Osumi-Sutherland, Terry Meehan, Paul Schofield, Maryann Martone, Mark Engelstad - https://orcid.org/0000-0001-5889-4463, Alexander Diehl, Ann Maglia, Anna Anagnostopoulos, Bgee Project - http://bgee.unil.ch, Brian K Hall, Carlo Torniai, Catherine Leroy, Ceri Van Slyke, Cynthia Smith, David Hill, Duncan Davidson, Frederic Bastian, Gene Ontology Consortium, Hilmar Lapp, James Balhoff, Jonathan Bard, Lydie Lane, Marc Robinson-Rechavi, NIF Project - http://neuinfo.org/, Onard Mejino, PATO Project, Paul Sereno, Paula Duek Roggli, Paula Mabee, Phenoscape Project, Rebecca Foulger, Robert Druzinsky, Shahim Essaid, Suzanna Lewis, Terry Hayamizu, Trish Whetzel, neXtProt project, Sarah Whitcher Kansa - https://orcid.org/0000-0001-7920-5321
creator: Melissa Haendel, Erik Segerdell, Nizar Ibrahim, Anne Niknejad, Aurelie Comte, David Blackburn, Wasila Dahdul, Chris Mungall - http://orcid.org/0000-0002-6601-2165 , Alex Dececchi
description: Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data.
title: Uber-anatomy ontology
versionIRI: http://purl.obolibrary.org/obo/uberon/releases/2018-07-30/uberon.owl
Git repository: https://github.com/cmungall/uberon/
SVN repository: https://obo.svn.sourceforge.net/svnroot/obo/uberon/
bug database: https://github.com/obophenotype/uberon/issues/
default-namespace: uberon
derived from resource: http://braininfo.rprc.washington.edu/; http://palaeos.com; http://purl.obolibrary.org/obo/cl.owl; http://purl.obolibrary.org/obo/hp.owl; http://purl.obolibrary.org/obo/zfa.owl; http://purl.obolibrary.org/obo/go.owl; http://purl.obolibrary.org/obo/bto.owl; http://purl.obolibrary.org/obo/caro.owl; http://purl.obolibrary.org/obo/fma.owl; http://purl.obolibrary.org/obo/mp.owl; http://www.ebi.ac.uk/efo/efo.owl; http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl; http://pons.incf.org/wiki/Common_Upper_Mammalian_Brain_Ontology_%28Cumbo%29; http://www.e-lico.eu/public/kupo/kupo.owl; http://dbpedia.org; http://www.brain-map.org; http://purl.obolibrary.org/obo/aao.owl; http://purl.obolibrary.org/obo/aba.owl; http://purl.obolibrary.org/obo/bila.owl; http://purl.obolibrary.org/obo/tao.owl; http://purl.obolibrary.org/obo/vhog.owl; http://purl.obolibrary.org/obo/vsao.owl; http://purl.obolibrary.org/obo/wbbt.owl; http://purl.obolibrary.org/obo/xao.owl; http://en.wikipedia.org/wiki/; http://uri.neuinfo.org/nif/nifstd; http://purl.obolibrary.org/obo/aeo.owl; http://purl.obolibrary.org/obo/ma.owl; http://purl.obolibrary.org/obo/ehdaa2.owl; http://purl.obolibrary.org/obo/emapa.owl; http://purl.obolibrary.org/obo/fbbt.owl; MESH; ISBN:9780674021839 The Tree of Life - Guillaume Lecointre, Herve Le Guyader; https://docs.google.com/document/d/1cPWBqrl_Qy7XHEWFqtR_PgQX61yRkgGuLaiDpnEXxkE/edit; ISBN-10:0443065837 Human embryology, Larsen; ISBN10:0073040584 Vertebrates, Kardong; ISBN:0030229073 Invertebrate Zoology, Barnes; ISBN:0683400088 Stedman's Medical Dictionary; ISBN:9780120749034 The laboratory rat; ISBN:9780878932504 Developmental Biology; ISBN10:1588900649 Color Atlas and Textbook of Human Anatomy: Nervous system and sensory organs By Werner Kahle, Michael Frotscher; http://wiki.phenotypercn.org/wg/phenotypercn/index.php?title=Neural_Crest_Workshop; http://wiki.phenotypercn.org/wiki/August_2012_Notes; ISBN:9780397517251 Surgical anatomy of the hand and upper extremity. By James R. Doyle and Michael J. Botte; PMID:11433360 Placental development: lessons from mouse mutants; ISBN:978-0-12-369548-2 Principles of Developmental Genetics, Sally A Moody; https://docs.google.com/document/d/1MnUgispgGfNQoezYzWzzGTnkAnI0gzRnJIwdip6MMtw/edit; ISBN10:1607950324 Craniofacial Embryogenetics & Development, 2nd edition, Sperber; ISBN-10:0226313379 Fins into Limbs: Evolution, Development, and Transformation, Hall; https://docs.google.com/spreadsheet/ccc?key=0Aj8NJdyb-leqdDM0R3hTVTRHRExDVjRCSkZEbDc5N1E#gid=0; https://docs.google.com/document/d/16JZOuH9sh_a8uIXA4cqg0Q1H6MV5yCj3-rhuKsZoV_U/edit; ISBN10:0123813611 Comparative Anatomy and Histology: A Mouse and Human Atlas, Treuting and Dintzis; PMID:16417468 Forgotten and novel aspects in pancreas development, Pieler and Chen; ISBN10:0471888893 Comparative Vertebrate Neuroanatomy: Evolution and Adaptation by Butler and Hodos; ISBN10:1588903958 Principles and practice of pediatric neurosurgery By A. Leland Albright, P. David Adelson, Ian F. Pollack; https://docs.google.com/document/d/1r9kNPpFYGdu0SpJDLyFAVQczBlG0wAZCBMd18gG3Ot8/edit#
homepage: http://uberon.org
is referenced by: http://genomebiology.com/2012/13/1/R5; http://www.ncbi.nlm.nih.gov/pubmed/22293552
mailing list: https://lists.sourceforge.net/lists/listinfo/obo-anatomy
publisher: http://uberon.org
rights: http://creativecommons.org/licenses/by/3.0/
treat-xrefs-as-equivalent: CARO; OG; GO; EFO; VSAO; AEO; BILA; BSPO
treat-xrefs-as-has-subclass: EV; NCIT; EHDAA; OGES; SCTID
treat-xrefs-as-is_a: VHOG
treat-xrefs-as-reverse-genus-differentia: AAO part_of NCBITaxon:8292; DHBA part_of NCBITaxon:9606; DMBA part_of NCBITaxon:10090; EHDAA2 part_of NCBITaxon:9606; EMAPA part_of NCBITaxon:10090; FBbt part_of NCBITaxon:7227; FBdv part_of NCBITaxon:7227; FMA part_of NCBITaxon:9606; HAO part_of NCBITaxon:7399; HBA part_of NCBITaxon:9606; HsapDv part_of NCBITaxon:9606; MA part_of NCBITaxon:10090; MBA part_of NCBITaxon:10090; MFO part_of NCBITaxon:8089; MmusDv part_of NCBITaxon:10090; OlatDv part_of NCBITaxon:8089; PBA part_of NCBITaxon:9443; SPD part_of NCBITaxon:6893; TADS part_of NCBITaxon:6939; TAO part_of NCBITaxon:32443; TGMA part_of NCBITaxon:44484; WBbt part_of NCBITaxon:6237; WBls part_of NCBITaxon:6237; XAO part_of NCBITaxon:8353; ZFA part_of NCBITaxon:7954; ZFS part_of NCBITaxon:7954

Number of Terms (including imported terms) (Detailed Statistics)

Top level terms and selected core terms

Number of SPARQL queries:8