Uberon multi-species anatomy ontology
Ontology: UBERON
- IRI: http://purl.obolibrary.org/obo/uberon.owl
- OBO Foundry: Library
- Download: http://purl.obolibrary.org/obo/uberon.owl
- Home: http://uberon.org
- Documentation: http://uberon.org
- Contact: cjmungall@lbl.gov
- Help: https://lists.sourceforge.net/lists/listinfo/obo-anatomy
- Description: An integrated cross-species anatomy ontology covering animals and bridging multiple species-specific ontologies
Annotations
- comment: Includes Ontology(OntologyID(OntologyIRI(< http://purl.obolibrary.org/obo/uberon-bridge-to-bfo.owl>) VersionIRI(<null>))) [Axioms: 20 Logical Axioms: 9]
- comment: Includes Ontology(OntologyID(OntologyIRI(< http://purl.obolibrary.org/obo/TEMP>) VersionIRI(<null>))) [Axioms: 437 Logical Axioms: 0]
- comment: Includes Ontology(OntologyID(OntologyIRI(< http://purl.obolibrary.org/obo/uberon/disjoint_union_over.owl>) VersionIRI(<null>))) [Axioms: 38 Logical Axioms: 38]
- contributor: David Osumi-Sutherland, Alexander Diehl, Alan Ruttenberg, David Hill, James Malone, George Gkoutos, Carlo Torniai, Gene Ontology Consortium, Catherine Leroy, Trish Whetzel, Terry Meehan, Yvonne Bradford, Hilmar Lapp, Maryann Martone, Bill Bug, Mark Engelstad - https://orcid.org/0000-0001-5889-4463, Ann Maglia, Anna Anagnostopoulos, Bgee Project - http://bgee.unil.ch, Brian K Hall, Ceri Van Slyke, Cynthia Smith, Duncan Davidson, Frederic Bastian, James Balhoff, Jonathan Bard, Lydie Lane, Marc Robinson-Rechavi, NIF Project - http://neuinfo.org/, Onard Mejino, PATO Project, Paul Schofield, Paul Sereno, Paula Duek Roggli, Paula Mabee, Phenoscape Project, Rebecca Foulger, Robert Druzinsky, Shahim Essaid, Suzanna Lewis, Terry Hayamizu, neXtProt project, Sarah Whitcher Kansa - https://orcid.org/0000-0001-7920-5321
- creator: Melissa Haendel, Nicolas Matentzoglu, Nizar Ibrahim, Alex Dececchi, Anne Niknejad, Aurelie Comte, David Blackburn, Erik Segerdell, Wasila Dahdul, Chris Mungall - http://orcid.org/0000-0002-6601-2165
- description: Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data.
- title: Uber-anatomy ontology
- versionIRI: http://purl.obolibrary.org/obo/uberon/releases/2021-11-28/uberon.owl
- versionInfo: 2021-11-28
- Git repository: https://github.com/cmungall/uberon/
- IAO_0000700: http://purl.obolibrary.org/obo/UBERON_0000104; http://purl.obolibrary.org/obo/UBERON_0001062
- SVN repository: https://obo.svn.sourceforge.net/svnroot/obo/uberon/
- bug database: https://github.com/obophenotype/uberon/issues/
- default-namespace: uberon
- derived from resource: http://braininfo.rprc.washington.edu/; http://palaeos.com; http://purl.obolibrary.org/obo/cl.owl; http://purl.obolibrary.org/obo/hp.owl; http://purl.obolibrary.org/obo/zfa.owl; http://purl.obolibrary.org/obo/go.owl; http://purl.obolibrary.org/obo/bto.owl; http://purl.obolibrary.org/obo/caro.owl; http://purl.obolibrary.org/obo/fma.owl; http://purl.obolibrary.org/obo/mp.owl; http://www.ebi.ac.uk/efo/efo.owl; http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl; http://pons.incf.org/wiki/Common_Upper_Mammalian_Brain_Ontology_%28Cumbo%29; http://www.e-lico.eu/public/kupo/kupo.owl; http://dbpedia.org; http://www.brain-map.org; http://purl.obolibrary.org/obo/aao.owl; http://purl.obolibrary.org/obo/aba.owl; http://purl.obolibrary.org/obo/bila.owl; http://purl.obolibrary.org/obo/tao.owl; http://purl.obolibrary.org/obo/vhog.owl; http://purl.obolibrary.org/obo/vsao.owl; http://purl.obolibrary.org/obo/wbbt.owl; http://purl.obolibrary.org/obo/xao.owl; http://en.wikipedia.org/wiki/; http://uri.neuinfo.org/nif/nifstd; http://purl.obolibrary.org/obo/aeo.owl; http://purl.obolibrary.org/obo/ma.owl; http://purl.obolibrary.org/obo/ehdaa2.owl; http://purl.obolibrary.org/obo/emapa.owl; http://purl.obolibrary.org/obo/fbbt.owl; https://docs.google.com/document/d/1cPWBqrl_Qy7XHEWFqtR_PgQX61yRkgGuLaiDpnEXxkE/edit; http://wiki.phenotypercn.org/wg/phenotypercn/index.php?title=Neural_Crest_Workshop; http://wiki.phenotypercn.org/wiki/August_2012_Notes; https://docs.google.com/document/d/1MnUgispgGfNQoezYzWzzGTnkAnI0gzRnJIwdip6MMtw/edit; https://docs.google.com/spreadsheet/ccc?key=0Aj8NJdyb-leqdDM0R3hTVTRHRExDVjRCSkZEbDc5N1E#gid=0; https://docs.google.com/document/d/16JZOuH9sh_a8uIXA4cqg0Q1H6MV5yCj3-rhuKsZoV_U/edit; https://docs.google.com/document/d/1r9kNPpFYGdu0SpJDLyFAVQczBlG0wAZCBMd18gG3Ot8/edit#; MESH; ISBN:9780674021839 The Tree of Life - Guillaume Lecointre, Herve Le Guyader; ISBN:0030229073 Invertebrate Zoology, Barnes; ISBN:0073040584 Vertebrates, Kardong; ISBN:0443065837 Human embryology, Larsen; ISBN:0683400088 Stedman's Medical Dictionary; ISBN:9780120749034 The laboratory rat; ISBN:9780878932504 Developmental Biology; ISBN:1588900649 Color Atlas and Textbook of Human Anatomy: Nervous system and sensory organs By Werner Kahle, Michael Frotscher; aggregates AAO from 13:04:2012; aggregates TAO from 09:08:2012; aggregates VSAO from 16:07:2012; ISBN:9780397517251 Surgical anatomy of the hand and upper extremity. By James R. Doyle and Michael J. Botte; ISBN:0123813611 Comparative Anatomy and Histology: A Mouse and Human Atlas, Treuting and Dintzis; PMID:11433360 Placental development: lessons from mouse mutants; ISBN:978-0-12-369548-2 Principles of Developmental Genetics, Sally A Moody; ISBN:1607950324 Craniofacial Embryogenetics & Development, 2nd edition, Sperber; ISBN:1588903958 Principles and practice of pediatric neurosurgery By A. Leland Albright, P. David Adelson, Ian F. Pollack; ISBN:0471888893 Comparative Vertebrate Neuroanatomy: Evolution and Adaptation by Butler and Hodos; PMID:16417468 Forgotten and novel aspects in pancreas development, Pieler and Chen; ISBN:0226313379 Fins into Limbs: Evolution, Development, and Transformation, Hall
- has_obo_format_version: 1.2
- homepage: http://uberon.org
- is referenced by: http://genomebiology.com/2012/13/1/R5; http://www.ncbi.nlm.nih.gov/pubmed/22293552
- license: http://creativecommons.org/licenses/by/3.0/
- mailing list: https://lists.sourceforge.net/lists/listinfo/obo-anatomy
- publisher: http://uberon.org
- treat-xrefs-as-equivalent: GO; AEO; BILA; CARO; VSAO; OG; EFO; BSPO
- treat-xrefs-as-has-subclass: NCIT; EV; EHDAA; OGES; SCTID
- treat-xrefs-as-is_a: VHOG
- treat-xrefs-as-reverse-genus-differentia: AAO part_of NCBITaxon:8292; DHBA part_of NCBITaxon:9606; DMBA part_of NCBITaxon:10090; EHDAA2 part_of NCBITaxon:9606; EMAPA part_of NCBITaxon:10090; FBbt part_of NCBITaxon:7227; FBdv part_of NCBITaxon:7227; FMA part_of NCBITaxon:9606; HAO part_of NCBITaxon:7399; HBA part_of NCBITaxon:9606; HsapDv part_of NCBITaxon:9606; MA part_of NCBITaxon:10090; MBA part_of NCBITaxon:10090; MFO part_of NCBITaxon:8089; MmusDv part_of NCBITaxon:10090; OlatDv part_of NCBITaxon:8089; PBA part_of NCBITaxon:9443; SPD part_of NCBITaxon:6893; TADS part_of NCBITaxon:6939; TAO part_of NCBITaxon:32443; TGMA part_of NCBITaxon:44484; WBbt part_of NCBITaxon:6237; WBls part_of NCBITaxon:6237; XAO part_of NCBITaxon:8353; ZFA part_of NCBITaxon:7954; ZFS part_of NCBITaxon:7954
Number of Terms (including imported terms) (Detailed Statistics)
- Class (20772)
- ObjectProperty (253)
- AnnotationProperty (286)
- Instance (17)
Top level terms and selected core terms
Number of SPARQL queries:8
